genome.fa.s4312.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018401565.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_469.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  45654

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1--1150	343	3.4	336	80	6	1227	35	13	13	37	1.84
1--1150	171	6.7	170	78	7	1051	35	13	13	37	1.84
952--1349	221	1.8	221	81	4	498	34	13	14	38	1.84
1172--1570	170	2.3	171	84	2	509	33	16	12	38	1.86
7605--8710	171	6.5	169	71	7	617	36	12	13	33	1.82
9078--9441	171	2.1	171	80	1	415	39	10	14	31	1.81
9587--10530	171	5.5	170	75	6	755	37	12	13	33	1.83
10682--11400	343	2.1	340	81	3	832	35	12	15	34	1.84
10682--11400	171	4.2	170	75	4	581	35	12	15	34	1.84
13825--15325	171	8.8	169	80	4	1519	37	13	13	35	1.84
13821--15325	342	4.4	341	81	2	1703	37	13	13	35	1.84
13821--15313	687	2.2	686	83	2	1852	37	12	13	35	1.84
15277--15378	51	2.0	52	88	9	156	24	20	10	44	1.83
15328--15708	171	2.2	171	80	3	410	35	13	13	34	1.84
17894--19067	171	6.9	170	82	5	1197	37	13	14	34	1.85
19172--19691	172	3.0	167	80	7	548	39	12	13	34	1.83
19957--20557	171	3.5	170	79	6	554	34	11	14	36	1.84
23664--24222	171	3.3	170	85	2	683	36	15	13	33	1.87
26006--26329	170	2.0	160	84	5	341	35	12	11	37	1.79
26572--26920	169	2.1	171	84	4	465	38	12	13	35	1.84
28500--28836	171	2.0	171	83	5	432	33	13	14	38	1.85
29497--30721	171	7.2	171	81	4	1263	34	12	13	39	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29497--30706	343	3.5	341	80	7	1182	34	12	13	39	1.83
29499--30721	514	2.4	509	81	6	1419	34	12	13	39	1.82
31804--32281	171	2.8	169	84	3	580	37	12	12	34	1.81
35456--36365	171	5.3	170	82	5	1046	34	14	12	38	1.84
38083--38395	172	1.8	172	81	4	391	40	12	11	35	1.79
38659--38945	156	1.8	156	82	4	373	37	11	13	34	1.80
44381--44543	88	2.0	78	89	2	166	34	17	15	26	1.89
45072--45390	171	1.9	161	82	5	322	32	11	12	40	1.79

Tables:   1

The End!