Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018401570.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_4694.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1803
ACGTcount: A:0.35, C:0.13, G:0.13, T:0.39


Found at i:1623 original size:21 final size:21

Alignment explanation


    Indices: 1599--1638  Score: 71
    Period size: 21  Copynumber: 1.9  Consensus size: 21

       1589 CATATATACC

                                 
       1599 TTGTCTAAATTAAGACAACTA
          1 TTGTCTAAATTAAGACAACTA

                  *            
       1620 TTGTCTTAATTAAGACAAC
          1 TTGTCTAAATTAAGACAAC

       1639 AACTAAAGTT


Statistics
Matches: 18,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  21   18  1.00

ACGTcount: A:0.40, C:0.15, G:0.10, T:0.35


Consensus pattern (21 bp):   
TTGTCTAAATTAAGACAACTA

Found at i:1629 original size:49 final size:50

Alignment explanation


    Indices: 1532--1639  Score: 132
    Period size: 49  Copynumber: 2.2  Consensus size: 50

       1522 CCCTTGTTTC

                              *              *         *      
       1532 AAAACAACACATATACTTTTGCGTAAATTAAGATAACACTTGTTTTAATT
          1 AAAACAACACATATACTTGTGCGTAAATTAAGACAACACTTGTCTTAATT

                     *                                          
       1582 AAAACAACATATATACCTTGT-C-TAAATTAAGACAACTA-TTGTCTTAATT
          1 AAAACAACACATATA-CTTGTGCGTAAATTAAGACAAC-ACTTGTCTTAATT

              *      
       1631 AAGACAACA
          1 AAAACAACA

       1640 ACTAAAGTTA


Statistics
Matches: 51,  Mismatches: 5, Indels: 5
        0.84            0.08        0.08

Matches are distributed among these distances:
  49   31  0.61
  50   16  0.31
  51    4  0.08

ACGTcount: A:0.44, C:0.16, G:0.07, T:0.32


Consensus pattern (50 bp):   
AAAACAACACATATACTTGTGCGTAAATTAAGACAACACTTGTCTTAATT
Done.