Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018401574.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_4698.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2291
ACGTcount: A:0.23, C:0.07, G:0.08, T:0.22

Warning! 908 characters in sequence are not A, C, G, or T


Found at i:1528 original size:172 final size:172

Alignment explanation


    Indices: 1274--1696  Score: 444
    Period size: 172  Copynumber: 2.5  Consensus size: 172

       1264 NNNNTTAATA

                              ** *                    *     *                
       1274 AAAAATAT-AAAAAAATTTGATTTAAAATCAATTTTGAGATTTTAAAATCTTTTAAAGCT-AGTA
          1 AAAAATATAAAAAAAATTCAAATTAAAATCAATTTTGAGATTATAAAACCTTTTAAAG-TGAGTA

                       **                     *           *            *     
       1337 ATAAGGCTTTTGTAGGAATAGGTGACTATAAATATG-CTTTTCTT-GTCAATAAAT-GCCTTTCT
         65 ATAAGGCTTTTAAAGGAATAGGTGACTATAAAT-GGACTTTTCTTCCT-AATAAATAGCATTT-T

                                      *       *  **        
       1399 CTTCACGTTCC-CTAAGGTAGACATTTAATTATAGCCTTTTTTAACT
        127 CTTCACGTTCCTC-AAGGTAGACATTCAATTATAACCAGTTTTAACT

                  *              *       *    **                             
       1445 AAAAATGTAAAAAAAATTCAACTTAAAATGAATTAAGAGATTATAAAACCTTTTAAAGTGAGTAA
          1 AAAAATATAAAAAAAATTCAAATTAAAATCAATTTTGAGATTATAAAACCTTTTAAAGTGAGTAA

                  *                *                              *          
       1510 TAAGGCCTTTAAAGGAATAGGTGCCTATAAATGGACTTTTCTTCCTAATAAATATCATTTTCTTC
         66 TAAGGCTTTTAAAGGAATAGGTGACTATAAATGGACTTTTCTTCCTAATAAATAGCATTTTCTTC

             *   *   * *     *            *        *  
       1575 ATGTTTCTCGATGTAGATATTCAATTATAATCAGTTTTATCT
        131 ACGTTCCTCAAGGTAGACATTCAATTATAACCAGTTTTAACT

                     *   *                                 *   *             
       1617 AAAAATATACAAAGAATTCAAATTAAAATCAATTTTTGAGATTATAATACCATTTAAAGTGAGTA
          1 AAAAATATAAAAAAAATTCAAATTAAAATCAA-TTTTGAGATTATAAAACCTTTTAAAGTGAGTA

                 *         
       1682 ATAAGACTTTTAAAG
         65 ATAAGGCTTTTAAAG

       1697 NNNNNNNNNN


Statistics
Matches: 206,  Mismatches: 39, Indels: 12
        0.80            0.15        0.05

Matches are distributed among these distances:
 171    9  0.04
 172  150  0.73
 173   47  0.23

ACGTcount: A:0.40, C:0.11, G:0.12, T:0.37


Consensus pattern (172 bp):   
AAAAATATAAAAAAAATTCAAATTAAAATCAATTTTGAGATTATAAAACCTTTTAAAGTGAGTAA
TAAGGCTTTTAAAGGAATAGGTGACTATAAATGGACTTTTCTTCCTAATAAATAGCATTTTCTTC
ACGTTCCTCAAGGTAGACATTCAATTATAACCAGTTTTAACT
Done.