Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018401575.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_4699.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1696
ACGTcount: A:0.17, C:0.06, G:0.07, T:0.16

Warning! 927 characters in sequence are not A, C, G, or T


Found at i:1688 original size:171 final size:173

Alignment explanation


    Indices: 1365--1691  Score: 412
    Period size: 171  Copynumber: 1.9  Consensus size: 173

       1355 GTCAATGAAC

                *       *          *                        *   *      *     
       1365 GCTTGTTTCTTCTTGTTTCTCAATGTAGACATTCAATTATAGTCTGTTTTAATAAAAAATGTAAA
          1 GCTTCTTTCTTCATGTTTCTCAAGGTAGACATTCAATTATAGTCTGTTGTAACAAAAAACGT-AA

                                                                             
       1430 AAACAAATCCAACTTAAAATCAATTATGAAGTTCTAAAACAATTTAAAGCTAGTAATAAGGCTTT
         65 AAACAAATCCAACTTAAAATCAATTATGAAGTTCTAAAACAATTTAAAGCTAGTAATAAGGCTTT

                                                        
       1495 CGAAAGAATAGGAGACTATAAATGGATCAGTCCTGCCCATAAAA
        130 CGAAAGAATAGGAGACTATAAATGGATCAGTCCTGCCCATAAAA

                                **           *                   *           
       1539 GCTTCTTTCTTCATGTTTCTTGAGGTAGACATTTAATTATAGTCTGTTGTAACCAAAAACGT-AA
          1 GCTTCTTTCTTCATGTTTCTCAAGGTAGACATTCAATTATAGTCTGTTGTAACAAAAAACGTAAA

             *     *                                 **                      
       1603 ATC-AATTCAACTTAAAATCAATTATG-AGATTAC-AAAACCGTTTAAAG-TGAGTAATAAGGCT
         66 AACAAATCCAACTTAAAATCAATTATGAAG-TT-CTAAAACAATTTAAAGCT-AGTAATAAGGCT

              **  *    *  *             
       1664 TTTTAACGAATGGGTGACTATAAATGGA
        128 TTCGAAAGAATAGGAGACTATAAATGGA

       1692 CTTTT


Statistics
Matches: 131,  Mismatches: 19, Indels: 9
        0.82            0.12        0.06

Matches are distributed among these distances:
 170    3  0.02
 171   71  0.54
 172    5  0.04
 174   52  0.40

ACGTcount: A:0.38, C:0.14, G:0.15, T:0.33


Consensus pattern (173 bp):   
GCTTCTTTCTTCATGTTTCTCAAGGTAGACATTCAATTATAGTCTGTTGTAACAAAAAACGTAAA
AACAAATCCAACTTAAAATCAATTATGAAGTTCTAAAACAATTTAAAGCTAGTAATAAGGCTTTC
GAAAGAATAGGAGACTATAAATGGATCAGTCCTGCCCATAAAA
Done.