Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018401579.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_4701.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 693

Length: 1156
ACGTcount: A:0.34, C:0.12, G:0.13, T:0.34

Warning! 85 characters in sequence are not A, C, G, or T


Found at i:1050 original size:170 final size:161

Alignment explanation


    Indices: 821--1137  Score: 350
    Period size: 170  Copynumber: 1.9  Consensus size: 161

        811 TGTTTTAACA

                              *         **   *               *            *  
        821 AAAAATATATAAAAAATTTAACTTAAAATTAATTATAAGATTATAAAAATACTTAAAGTGAGTAA
          1 AAAAATATATAAAAAATTCAACTTAAAACCAATAATAAGATTATAAAAACACTTAAAGTGAGCAA

                                                                       *     
        886 TAAGGCTTTCGAAGATATGGGTGACTATAAATGGACATTTCTTGCCAATGGATATATTTTTCTTC
         66 TAAGGCTTTCGAAGATATGGGTGACTATAAATGGACATTTCTTGCCAATGGATATATTTCTCTTC

                                                      
        951 ACGTTTCTCT-AGGTAGANNNNNNNNNNTAATCTATTTTAAT
        131 ACGTTTCT-TGAGGTAGA----------TAATCTATTTTAAT

                  *                 *                       *  *        *    
        992 AAAAATGTA-AAAAAATTCAACTTCAAACCAATAATAAGATTATAAAACCATTTAAAGTGTGCAA
          1 AAAAATATATAAAAAATTCAACTTAAAACCAATAATAAGATTATAAAAACACTTAAAGTGAGCAA

               *     *    *                     *   *              *         
       1056 TAATGCTTTTGAAGGTATGGGTGACTATAAATGGACCTTTTTTGCCAATGGATATCTTTCTCTTC
         66 TAAGGCTTTCGAAGATATGGGTGACTATAAATGGACATTTCTTGCCAATGGATATATTTCTCTTC

             *               
       1121 ATGTTTCTTGAGGTAGA
        131 ACGTTTCTTGAGGTAGA

       1138 CATTCAATTA


Statistics
Matches: 126,  Mismatches: 19, Indels: 3
        0.85            0.13        0.02

Matches are distributed among these distances:
 169    1  0.01
 170  117  0.93
 171    8  0.06

ACGTcount: A:0.38, C:0.11, G:0.14, T:0.35


Consensus pattern (161 bp):   
AAAAATATATAAAAAATTCAACTTAAAACCAATAATAAGATTATAAAAACACTTAAAGTGAGCAA
TAAGGCTTTCGAAGATATGGGTGACTATAAATGGACATTTCTTGCCAATGGATATATTTCTCTTC
ACGTTTCTTGAGGTAGATAATCTATTTTAAT
Done.