Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018401592.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_4713.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 618

Length: 1031
ACGTcount: A:0.28, C:0.11, G:0.10, T:0.29

Warning! 220 characters in sequence are not A, C, G, or T


Found at i:888 original size:171 final size:160

Alignment explanation


    Indices: 694--1009  Score: 316
    Period size: 171  Copynumber: 1.9  Consensus size: 160

        684 TATAATCTCA

                          *                            *                    *
        694 TAATTGATTTTAAGTTAAATTTTTTTATAATTTTGA-TTAAAATAGACTATAATTGAAAGTCTGT
          1 TAATTGATTTTAAGCTAAATTTTTTT-TAATTTTGAGTTAAAACAGACTATAATTGAAAGTCT-A

                       *                      *           *           *      
        758 C-TTGAGAAACGTGAAGAAAAAAT-CATTCATTGGCAAAAAAAGTCTATTT-ATAGTCTCCCATT
         64 CGTTGAGAAACATGAAG--AAAATGCATTCATTGACAAAAAAAGTCCATTTCATA-TCACCCATT

                                               
        820 CCCGCAAAAGCCTTATTACTATATTTAAATGGTTT
        126 CCCGCAAAAGCCTTATTACTATATTTAAATGGTTT

                                      *           *    *          * *        
        855 TNNNNNNNNNNAATTGATTTTAAGCTCAATTTTTTTTACTTTTTAGTTAAAACATATTATAATTG
          1 T----------AATTGATTTTAAGCTAAATTTTTTTTAATTTTGAGTTAAAACAGACTATAATTG

              *                                         *             *      
        920 AACGTCTACGTTGAGAAACATGAAGAAAATGCATTCATTGACAAGAAAAGTCCATTTCTTATCAC
         56 AAAGTCTACGTTGAGAAACATGAAGAAAATGCATTCATTGACAAAAAAAGTCCATTTCATATCAC

                   **                
        985 CCATTCCTTCAAAAGCCTTATTACT
        121 CCATTCCCGCAAAAGCCTTATTACT

       1010 CACGTTAAAT


Statistics
Matches: 124,  Mismatches: 17, Indels: 19
        0.77            0.11        0.12

Matches are distributed among these distances:
 161    1  0.01
 169    5  0.04
 170   57  0.46
 171   61  0.49

ACGTcount: A:0.35, C:0.14, G:0.11, T:0.37


Consensus pattern (160 bp):   
TAATTGATTTTAAGCTAAATTTTTTTTAATTTTGAGTTAAAACAGACTATAATTGAAAGTCTACG
TTGAGAAACATGAAGAAAATGCATTCATTGACAAAAAAAGTCCATTTCATATCACCCATTCCCGC
AAAAGCCTTATTACTATATTTAAATGGTTT
Done.