Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018397687.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_3457.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 663

Length: 1106
ACGTcount: A:0.32, C:0.12, G:0.11, T:0.36

Warning! 101 characters in sequence are not A, C, G, or T


Found at i:1057 original size:170 final size:167

Alignment explanation


    Indices: 557--1106  Score: 432
    Period size: 170  Copynumber: 3.2  Consensus size: 167

        547 TATTAGGAAA

                        * * *  *   *   *    *   *                 *          
        557 CATTTATAGTCAGTTACGCCATCTAAACCCTTGTTAGTCACTTTAAATAGTTTTCTAATTTATAA
          1 CATTTATAGTCACTCATGCTATCAAAAACCTTATTACTCACTTTAAATAGTTTTATAATTTATAA

                                    *                                        
        622 ATGATTTTAAATCAAAAT-ATTTTTTATTTTGGATTAAAAC-AGATCATAATTGGATGTTTGCAT
         66 ATGATTTTAAATCAAAATCATTTTAT-TTTTGG-TTAAAACTA-ATCATAATT-GATGTTTGCAT

                    *      **    *     *    * *     *  
        685 TGAGAAACATGAAGTGGAA-GTCATGCTTTGATAGGAAAAGTC
        127 TGA-AAACTTGAAG-CAAATGCCATGCATTGACAAGAAAACTC

                          *     * *      *     *  *    *                     
        727 CATTTATAGTCACTTATGCTTTTAAAAACTTTATTTCTTACTTCAAATAGTTTTATAATCTTATA
          1 CATTTATAGTCACTCATGCTATCAAAAACCTTATTACTCACTTTAAATAGTTTTATAAT-TTATA

                        * *      *            *             *   *            
        792 AATGATTTTAGACTGAAAA-CTTTTTCATTTTTGCTTAAAA-TCAATCGTAACTGAATGTTTGCA
         65 AATGATTTTA-AATCAAAATCATTTT-ATTTTTGGTTAAAACT-AATCATAATTG-ATGTTTGCA

              *             * *  *                     *
        855 TCAGAAAA-TGTGAAGTAGATTCCATGCATTGACAAGAAAACTG
        126 T-TGAAAACT-TGAAGCAAATGCCATGCATTGACAAGAAAACTC

            *    *                     *                         *  *        
        898 TATTTCTAGTCACTCATGCTATCAAAAGCCTTATTACTCACTTTAAATAGTTTAATCATTTATAA
          1 CATTTATAGTCACTCATGCTATCAAAAACCTTATTACTCACTTTAAATAGTTTTATAATTTATAA

              *                      *               *   *                   
        963 ATAATTTTAAATCAAAATCACTTTTGTTTTTGGTTAAAACTTATCCTAATTAGATGTTTGCATTG
         66 ATGATTTTAAATCAAAATCA-TTTTATTTTTGGTTAAAACTAATCATAATT-GATGTTTGCATT-

                                  *              *  
       1028 GAAAACTTGAAGCAAATGCCATTCATTGACAAGAAAAGTC
        128 GAAAACTTGAAGCAAATGCCATGCATTGACAAGAAAACTC

              *                     **               
       1068 CACTTATAGTCAC-CTATGCTAT-TGAAACCTTTATTACTC
          1 CATTTATAGTCACTC-ATGCTATCAAAAACC-TTATTACTC


Statistics
Matches: 295,  Mismatches: 67, Indels: 36
        0.74            0.17        0.09

Matches are distributed among these distances:
 169   11  0.04
 170  149  0.51
 171  116  0.39
 172   18  0.06
 173    1  0.00

ACGTcount: A:0.35, C:0.14, G:0.12, T:0.39


Consensus pattern (167 bp):   
CATTTATAGTCACTCATGCTATCAAAAACCTTATTACTCACTTTAAATAGTTTTATAATTTATAA
ATGATTTTAAATCAAAATCATTTTATTTTTGGTTAAAACTAATCATAATTGATGTTTGCATTGAA
AACTTGAAGCAAATGCCATGCATTGACAAGAAAACTC
Done.