Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018401604.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_4724.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1921
ACGTcount: A:0.36, C:0.10, G:0.14, T:0.40

Warning! 10 characters in sequence are not A, C, G, or T


Found at i:1629 original size:30 final size:30

Alignment explanation


    Indices: 1594--1660  Score: 73
    Period size: 30  Copynumber: 2.2  Consensus size: 30

       1584 ATAAATAATT

                     *     *    *          
       1594 AAATATTAATATTTATTTGATTCAAAAT-AA
          1 AAATATTAAAATTTAATTGAAT-AAAATAAA

                  *                *      
       1624 AAATATAAAAATTTAATTGAATATAATAAA
          1 AAATATTAAAATTTAATTGAATAAAATAAA

                   
       1654 AAATATT
          1 AAATATT

       1661 TATTTAAATA


Statistics
Matches: 30,  Mismatches: 6, Indels: 2
        0.79            0.16        0.05

Matches are distributed among these distances:
  29    4  0.13
  30   26  0.87

ACGTcount: A:0.57, C:0.01, G:0.03, T:0.39


Consensus pattern (30 bp):   
AAATATTAAAATTTAATTGAATAAAATAAA

Found at i:1656 original size:23 final size:24

Alignment explanation


    Indices: 1625--1671  Score: 60
    Period size: 24  Copynumber: 2.0  Consensus size: 24

       1615 TCAAAATAAA

                *             *     
       1625 AATATAAAA-ATTTAATTGAATAT
          1 AATAAAAAATATTTAATTAAATAT

                           *        
       1648 AATAAAAAATATTTATTTAAATAT
          1 AATAAAAAATATTTAATTAAATAT

       1672 TTATAAATAA


Statistics
Matches: 20,  Mismatches: 3, Indels: 1
        0.83            0.12        0.04

Matches are distributed among these distances:
  23    8  0.40
  24   12  0.60

ACGTcount: A:0.57, C:0.00, G:0.02, T:0.40


Consensus pattern (24 bp):   
AATAAAAAATATTTAATTAAATAT

Done.