Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018401610.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_473.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6501
ACGTcount: A:0.17, C:0.07, G:0.06, T:0.19

Warning! 3344 characters in sequence are not A, C, G, or T


Found at i:6112 original size:171 final size:170

Alignment explanation


    Indices: 5647--6112  Score: 449
    Period size: 171  Copynumber: 2.7  Consensus size: 170

       5637 NNNNNNNNNN

                 *        *             *                       *            
       5647 TTTTAGGTTGAATTGTTTTACATTTTTTTATTAAAACAGACTATAATTGAATATTTGCCTTGAGA
          1 TTTTAAGTTGAATTTTTTTACATTTTTTGATTAAAACAG-CTATAATTGAATGTTTGCCTTGAGA

                                      *           *           **             
       5712 AACATGAAGAAACAAGTATTCATTGGCT-AGAAAAGTCTATTTATAGCCTATCATTCCTTCAAAA
         65 AACATGAAGAAA-AAGTATTCATT-GATAAGAAAAGTCCATTTATAGCCTCCCATTCCTTCAAAA

            *                                          
       5776 TCCTTATTACTCGCTTTAAATGGTTTTATGATCTACTAATTAA
        128 GCCTTATTACTCGCTTTAAATGGTTTTATGATCTACTAATTAA

                        *                       *              *   * **  *   
       5819 TTTTAAGTTGAAGTTTTTTACA-TTTTTGATTAAAATA-CATAATAATTGACTGTCTATCTCGAG
          1 TTTTAAGTTGAATTTTTTTACATTTTTTGATTAAAACAGC-T-ATAATTGAATGTTTGCCTTGAG

              * *                  *  **  *                * *  *            
       5882 AATCGTGAAGAAAAATGTATTCAATGGCAAAAAAAGTCCATTTATAGTCACCTATTCCTTCAAAA
         64 AAACATGAAGAAAAA-GTATTCATTGATAAGAAAAGTCCATTTATAGCCTCCCATTCCTTCAAAA

                       **********      *               * 
       5947 GCCTTATTACTNNNNNNNNNNGGTTTTCT-AGTCT-CATAATTGA
        128 GCCTTATTACTCGCTTTAAATGGTTTTATGA-TCTAC-TAATTAA

                                *                                            
       5990 TTTTAAGTTGAATTTTTTTATATTTTTTGA-TAAAACAGGCTATAATTGAATGTTTGCCTTGAGA
          1 TTTTAAGTTGAATTTTTTTACATTTTTTGATTAAAACA-GCTATAATTGAATGTTTGCCTTGAGA

             *                                                         
       6054 ACCATGAAGAAAAAGATATTCATTGATAAGAAAAGTCCATTTATAGCCTCCCATTCCTT
         65 AACATGAAGAAAAAG-TATTCATTGATAAGAAAAGTCCATTTATAGCCTCCCATTCCTT

       6113 TAATAGNNNN


Statistics
Matches: 231,  Mismatches: 53, Indels: 21
        0.76            0.17        0.07

Matches are distributed among these distances:
 169    1  0.00
 170    7  0.03
 171  195  0.84
 172   27  0.12
 173    1  0.00

ACGTcount: A:0.33, C:0.13, G:0.13, T:0.39


Consensus pattern (170 bp):   
TTTTAAGTTGAATTTTTTTACATTTTTTGATTAAAACAGCTATAATTGAATGTTTGCCTTGAGAA
ACATGAAGAAAAAGTATTCATTGATAAGAAAAGTCCATTTATAGCCTCCCATTCCTTCAAAAGCC
TTATTACTCGCTTTAAATGGTTTTATGATCTACTAATTAA
Done.