Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018397689.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_3604.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 651

Length: 1085
ACGTcount: A:0.23, C:0.08, G:0.06, T:0.23

Warning! 432 characters in sequence are not A, C, G, or T


Found at i:784 original size:29 final size:30

Alignment explanation


    Indices: 751--814  Score: 85
    Period size: 30  Copynumber: 2.2  Consensus size: 30

        741 CTTTTAATTA

                                          
        751 TTTTAAAAAATTTAAAT-AAATTTTTATAT
          1 TTTTAAAAAATTTAAATAAAATTTTTATAT

                 ** *    *                
        780 TTTTATTACATTTCAATAAAATTTTTATAT
          1 TTTTAAAAAATTTAAATAAAATTTTTATAT

                 
        810 TTTTA
          1 TTTTA

        815 TTTTGAACTA


Statistics
Matches: 30,  Mismatches: 4, Indels: 1
        0.86            0.11        0.03

Matches are distributed among these distances:
  29   13  0.43
  30   17  0.57

ACGTcount: A:0.41, C:0.03, G:0.00, T:0.56


Consensus pattern (30 bp):   
TTTTAAAAAATTTAAATAAAATTTTTATAT

Found at i:802 original size:30 final size:29

Alignment explanation


    Indices: 760--816  Score: 96
    Period size: 30  Copynumber: 1.9  Consensus size: 29

        750 ATTTTAAAAA

                                         
        760 ATTTAAATAAATTTTTATATTTTTATTAC
          1 ATTTAAATAAATTTTTATATTTTTATTAC

                *                       
        789 ATTTCAATAAAATTTTTATATTTTTATT
          1 ATTTAAAT-AAATTTTTATATTTTTATT

        817 TTGAACTAAG


Statistics
Matches: 26,  Mismatches: 1, Indels: 1
        0.93            0.04        0.04

Matches are distributed among these distances:
  29    7  0.27
  30   19  0.73

ACGTcount: A:0.37, C:0.04, G:0.00, T:0.60


Consensus pattern (29 bp):   
ATTTAAATAAATTTTTATATTTTTATTAC

Found at i:973 original size:33 final size:33

Alignment explanation


    Indices: 936--998  Score: 90
    Period size: 33  Copynumber: 1.9  Consensus size: 33

        926 TAGGTATGAC

                         *          *        
        936 ATAACATGCTAATTTATCATAATTGATAATAAT
          1 ATAACATGCTAATATATCATAATTAATAATAAT

                    * *                   
        969 ATAACATGTTGATATATCATAATTAATAAT
          1 ATAACATGCTAATATATCATAATTAATAAT

        999 GATGTAACCA


Statistics
Matches: 26,  Mismatches: 4, Indels: 0
        0.87            0.13        0.00

Matches are distributed among these distances:
  33   26  1.00

ACGTcount: A:0.46, C:0.08, G:0.06, T:0.40


Consensus pattern (33 bp):   
ATAACATGCTAATATATCATAATTAATAATAAT
Done.