Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018401614.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_4733.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2846
ACGTcount: A:0.27, C:0.10, G:0.15, T:0.27

Warning! 593 characters in sequence are not A, C, G, or T


Found at i:696 original size:73 final size:73

Alignment explanation


    Indices: 572--758  Score: 230
    Period size: 73  Copynumber: 2.6  Consensus size: 73

        562 GAAAAAGAAC

                      *      *         *           *    ***            *     
        572 ACTTAATCGAGTAAGAAATTTTGTTAGCCGACTAAGAGCTTACTGTTAGAAACTAGGTTTAGAGA
          1 ACTTAATCGACTAAGAAGTTTTGTTAGTCGACTAAGAGCCTACTACAAGAAACTAGGTTCAGAGA

                    
        637 CAGAAACG
         66 CAGAAACG

                                                                             
        645 ACTTAATCGACTAAGAAGTTTTGTTAGTCGACTAAGAGCCTACTACAAGAAACTAGGTTCAGAGA
          1 ACTTAATCGACTAAGAAGTTTTGTTAGTCGACTAAGAGCCTACTACAAGAAACTAGGTTCAGAGA

            *   * * 
        710 TAGAGATG
         66 CAGAAACG

                           *  ***        *           
        718 ACTTAATCGACTAAGTAGCAATGTTAGTCAACTAAGAGCCT
          1 ACTTAATCGACTAAGAAGTTTTGTTAGTCGACTAAGAGCCT

        759 TCTGTCTGAA


Statistics
Matches: 98,  Mismatches: 16, Indels: 0
        0.86            0.14        0.00

Matches are distributed among these distances:
  73   98  1.00

ACGTcount: A:0.37, C:0.16, G:0.21, T:0.27


Consensus pattern (73 bp):   
ACTTAATCGACTAAGAAGTTTTGTTAGTCGACTAAGAGCCTACTACAAGAAACTAGGTTCAGAGA
CAGAAACG
Done.