Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018397690.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_5483.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 627

Length: 1046
ACGTcount: A:0.32, C:0.13, G:0.12, T:0.40

Warning! 30 characters in sequence are not A, C, G, or T


Found at i:870 original size:23 final size:23

Alignment explanation


    Indices: 844--888  Score: 63
    Period size: 23  Copynumber: 2.0  Consensus size: 23

        834 TTTTTTCTTC

                     *             
        844 TCTTTAATTGTTCTTTCAAGTTG
          1 TCTTTAATTATTCTTTCAAGTTG

                  *         *     
        867 TCTTTATTTATTCTTTTAAGTT
          1 TCTTTAATTATTCTTTCAAGTT

        889 ATATTTTCCT


Statistics
Matches: 19,  Mismatches: 3, Indels: 0
        0.86            0.14        0.00

Matches are distributed among these distances:
  23   19  1.00

ACGTcount: A:0.18, C:0.11, G:0.09, T:0.62


Consensus pattern (23 bp):   
TCTTTAATTATTCTTTCAAGTTG
Done.