Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018401623.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_4741.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2360
ACGTcount: A:0.28, C:0.09, G:0.10, T:0.28

Warning! 605 characters in sequence are not A, C, G, or T


Found at i:1723 original size:171 final size:169

Alignment explanation


    Indices: 1182--1761  Score: 551
    Period size: 168  Copynumber: 3.4  Consensus size: 169

       1172 NNNNNNNNNN

                                   *                   *        * *          
       1182 AATCTCATAATTGATTTTAAGTTTAATTGTTTTTACATTTTTGATTAAAACAGATTATAATTGAA
          1 AATCTCATAATTGATTTTAAGTTGAATT-TTTTTACATTTTTGGTTAAAACAAACTATAATTGAA

               *       * **              *     *             **          *   
       1247 TGTATGCCTCATGGCACAT-AGAGAAAAATGTATTTATTGGTAAGAAAACCCCATTTATAGTTAC
         65 TGTCTGCCTCAAGAAACATGA-AGAAAAAGGTATTCATTGG-AAGAAAAGTCCATTTATAGCT-C

                      *                             *  
       1311 CCATTCCTTTTAAAGCCTTATTACTTGCTTTAAATGATTTGAT
        127 CCATTCCTTTAAAAGCCTTATTACTTGCTTTAAATGATTTTAT

                  *                   *               *   *                  
       1354 AAT-TATATAATTGATTTTAAGTTGATTTTTTTTACATTTTTCGTTCAAACAAACTATAATTGAA
          1 AATCT-CATAATTGATTTTAAGTTGAATTTTTTTACATTTTTGGTTAAAACAAACTATAATTGAA

                   *    *     *  *        *            *                     
       1418 TG-CTTGTCTCAGGAAACGTGTAGAAAAAGCTATTCATT--AAAAAAAGTCCATTTATAG-TCAC
         65 TGTC-TGCCTCAAGAAACATGAAGAAAAAGGTATTCATTGGAAGAAAAGTCCATTTATAGCTC-C

               *     *         **    **        *       
       1479 TCAATCCTTCAAAAGCCTTCGTACTCACTTTAAATTATTTTAT
        128 -CATTCCTTTAAAAGCCTTATTACTTGCTTTAAATGATTTTAT

                  *     *         *                            *      *      
       1522 AATCTCTTAATTAATTTTAAGTAGAATTTTTTTACATTTTTGGTTAAAACAGACTATATTTGAAT
          1 AATCTCATAATTGATTTTAAGTTGAATTTTTTTACATTTTTGGTTAAAACAAACTATAATTGAAT

                *   *       *                             *                  
       1587 GTCTACCTTAAGAAACTTGAAGAAAAAGGTATTCATTGGCAAGAAATGTCCATTTATAGCCTCCC
         66 GTCTGCCTCAAGAAACATGAAGAAAAAGGTATTCATTGG-AAGAAAAGTCCATTTATAG-CTCCC

                                         *    *      
       1652 ATTCCTTTAAAAGCCTTATTACTTGCTTTTAATGCTTTTAT
        129 ATTCCTTTAAAAGCCTTATTACTTGCTTTAAATGATTTTAT

                         **  * *   *           *   *      *       *          
       1693 AATCTCATAATTGGCTTCAGGTTTAATTTTTTTTATATTATTGGTTCAAACAAATTATAATTGAA
          1 AATCTCATAATTGATTTTAAGTTGAA-TTTTTTTACATTTTTGGTTAAAACAAACTATAATTGAA

                
       1758 TGTC
         65 TGTC

       1762 NNNNNNNNNN


Statistics
Matches: 324,  Mismatches: 71, Indels: 26
        0.77            0.17        0.06

Matches are distributed among these distances:
 166    1  0.00
 167    2  0.01
 168  131  0.40
 169    2  0.01
 171  126  0.39
 172   60  0.19
 173    2  0.01

ACGTcount: A:0.34, C:0.14, G:0.11, T:0.41


Consensus pattern (169 bp):   
AATCTCATAATTGATTTTAAGTTGAATTTTTTTACATTTTTGGTTAAAACAAACTATAATTGAAT
GTCTGCCTCAAGAAACATGAAGAAAAAGGTATTCATTGGAAGAAAAGTCCATTTATAGCTCCCAT
TCCTTTAAAAGCCTTATTACTTGCTTTAAATGATTTTAT
Done.