Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018401625.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_4743.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2462
ACGTcount: A:0.12, C:0.39, G:0.37, T:0.12


Found at i:1858 original size:21 final size:20

Alignment explanation


    Indices: 1832--1872  Score: 55
    Period size: 21  Copynumber: 2.0  Consensus size: 20

       1822 GCACGCGCTC

                      *          
       1832 CGCGCGGACCTGCGCGGCCCA
          1 CGCGCGGACCGGCGC-GCCCA

                   *            
       1853 CGCGCGGGCCGGCGCGCCCA
          1 CGCGCGGACCGGCGCGCCCA

       1873 GGATGCGCAG


Statistics
Matches: 18,  Mismatches: 2, Indels: 1
        0.86            0.10        0.05

Matches are distributed among these distances:
  20    5  0.28
  21   13  0.72

ACGTcount: A:0.07, C:0.49, G:0.41, T:0.02


Consensus pattern (20 bp):   
CGCGCGGACCGGCGCGCCCA
Done.