Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018401630.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_4748.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1992
ACGTcount: A:0.14, C:0.04, G:0.04, T:0.14

Warning! 1283 characters in sequence are not A, C, G, or T


Found at i:110 original size:17 final size:18

Alignment explanation


    Indices: 68--112  Score: 56
    Period size: 17  Copynumber: 2.5  Consensus size: 18

         58 ATATAATAGT

                               
         68 ATAAAATAATTACTATCAA
          1 ATAAAA-AATTACTATCAA

            *              *  
         87 TTAAAAAATTA-TATGAA
          1 ATAAAAAATTACTATCAA

                     
        104 ATAAAAAAT
          1 ATAAAAAAT

        113 AAGTTTTTCA


Statistics
Matches: 23,  Mismatches: 3, Indels: 2
        0.82            0.11        0.07

Matches are distributed among these distances:
  17   13  0.57
  18    5  0.22
  19    5  0.22

ACGTcount: A:0.62, C:0.04, G:0.02, T:0.31


Consensus pattern (18 bp):   
ATAAAAAATTACTATCAA
Done.