Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397297.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_236.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  298872

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
16419--16450
14
2.3
14
100
0
64
6
9
31
53
1.58
33054--33226
29
6.2
29
73
9
137
23
20
19
36
1.95
43305--43384
28
2.9
27
74
10
81
33
18
23
23
1.97
52779--52872
25
3.6
25
77
8
89
26
37
14
21
1.92
69060--69292
125
1.9
125
86
0
331
31
12
20
31
1.89
83358--83393
11
3.3
11
100
0
72
30
0
16
52
1.44
98032--98077
21
2.2
21
88
7
67
47
19
4
28
1.68
165306--165334
11
2.6
11
100
0
58
34
6
0
58
1.25
166383--166567
29
6.6
29
69
9
100
38
18
20
21
1.93
172426--172509
25
3.2
25
77
5
78
21
16
32
29
1.95
176332--176364
5
6.8
5
89
6
50
36
0
0
63
0.95
181646--181727
29
2.8
29
88
3
121
42
19
17
20
1.89
182770--182809
21
1.9
21
89
0
62
32
0
32
35
1.58
210659--210696
19
2.0
19
100
0
76
31
15
5
47
1.68
212234--212278
19
2.4
19
92
0
72
48
8
17
24
1.75
212243--212280
19
2.0
19
100
0
76
47
5
15
31
1.68
216865--216903
17
2.2
17
86
9
51
53
0
5
41
1.23
229944--229983
19
2.2
19
86
4
55
50
2
0
47
1.14
231201--231242
16
2.6
16
85
7
59
71
0
28
0
0.86
240508--240548
5
8.2
5
94
0
73
41
17
0
41
1.49
241310--241452
49
2.9
50
77
5
139
36
25
10
27
1.89
243111--243155
16
2.9
15
83
6
54
2
26
0
71
0.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
248473--248592
35
3.4
35
76
1
105
36
27
17
18
1.93
249013--249167
49
3.2
50
81
3
190
37
25
11
25
1.90
252609--252708
29
3.4
29
84
5
139
45
20
19
16
1.86
254800--254841
16
2.8
15
89
7
59
0
28
0
71
0.86
265095--265125
15
2.1
15
93
0
53
41
12
3
41
1.59
272318--272358
5
8.2
5
88
0
64
39
17
2
41
1.62
277017--277121
49
2.1
49
82
3
122
39
24
7
28
1.83
281557--281594
16
2.5
16
87
8
53
0
28
0
71
0.87
284132--284182
21
2.4
21
100
0
102
43
15
19
21
1.88

Tables:   1

The End!