Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_018401653.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_4770.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2077
ACGTcount: A:0.19, C:0.06, G:0.07, T:0.19
Warning! 1018 characters in sequence are not A, C, G, or T
Found at i:595 original size:171 final size:171
Alignment explanation
Indices: 418--733 Score: 452
Period size: 171 Copynumber: 1.8 Consensus size: 171
408 NNNNNNNNNN
* * * * * * * *
418 TATAAAACCATTTAAAGTGAGTAATAGGGCTTTTGAAGGAATGGGAGGCTGTAACTACACTTTTC
1 TATAAAACCATTTAAAATGACTAAAAGGGCTGTTGAAGGAATGGGAGACTATAAATACAATTTTC
* *
483 TTGCCAATGAATGCTTTTTTCTTCATGTTTCTTGAGGCAGACATTTAATTATAGCCTGTTTGAAT
66 TTGCCAATGAATGCTTTTTTCTTCATGTTTCCTGAGGCAGACATTCAATTATAGCCTGTTTGAAT
*
548 GAAAACTATAAAAAAATTGAAATTAAAATTAATTATGAGAT
131 GAAAAATATAAAAAAATTGAAATTAAAATTAATTATGAGAT
* * **
589 TATAAAACCATTTAAAATGACTAAAATGGCTGTTGAAGGAATTGGAGACTATAAATGGAATTTTC
1 TATAAAACCATTTAAAATGACTAAAAGGGCTGTTGAAGGAATGGGAGACTATAAATACAATTTTC
* ** *
654 TTGTCAATGAATGCTTTTTTCTTCATGTTTCCTGAGGCAGACATTCAATTATAGTTTGTTTTAAT
66 TTGCCAATGAATGCTTTTTTCTTCATGTTTCCTGAGGCAGACATTCAATTATAGCCTGTTTGAAT
*
719 GAAAAATGTAAAAAA
131 GAAAAATATAAAAAA
734 CTTCAANNNN
Statistics
Matches: 125, Mismatches: 20, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
171 125 1.00
ACGTcount: A:0.36, C:0.11, G:0.17, T:0.36
Consensus pattern (171 bp):
TATAAAACCATTTAAAATGACTAAAAGGGCTGTTGAAGGAATGGGAGACTATAAATACAATTTTC
TTGCCAATGAATGCTTTTTTCTTCATGTTTCCTGAGGCAGACATTCAATTATAGCCTGTTTGAAT
GAAAAATATAAAAAAATTGAAATTAAAATTAATTATGAGAT
Done.