Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018401658.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_4775.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 665

Length: 1109
ACGTcount: A:0.29, C:0.13, G:0.22, T:0.33

Warning! 30 characters in sequence are not A, C, G, or T


Found at i:831 original size:25 final size:24

Alignment explanation


    Indices: 796--854  Score: 64
    Period size: 25  Copynumber: 2.4  Consensus size: 24

        786 GGTCTGTGAT

                  *                  
        796 ATATATATGGCAAGACCACAGGTTG
          1 ATATATGTGGCAAGACCACAGG-TG

                       *  *     *   
        821 ATATATGTGGCTAGGCCACATGTG
          1 ATATATGTGGCAAGACCACAGGTG

                 *    
        845 ATATACGTGG
          1 ATATATGTGG

        855 TTGCAATCAC


Statistics
Matches: 29,  Mismatches: 5, Indels: 1
        0.83            0.14        0.03

Matches are distributed among these distances:
  24   11  0.38
  25   18  0.62

ACGTcount: A:0.31, C:0.15, G:0.27, T:0.27


Consensus pattern (24 bp):   
ATATATGTGGCAAGACCACAGGTG
Done.