Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018401667.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_4783.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 620

Length: 1034
ACGTcount: A:0.24, C:0.06, G:0.07, T:0.22

Warning! 427 characters in sequence are not A, C, G, or T


Found at i:960 original size:168 final size:159

Alignment explanation


    Indices: 722--1025  Score: 274
    Period size: 168  Copynumber: 1.9  Consensus size: 159

        712 NNNNNNNNNN

                    *         *                               *   *     *    
        722 TGGGTGACTATAAATAGATTTTTCTTGCTAATGAATACCTTTTTTCCATATTTTTTAAGGTAAAC
          1 TGGGTGACCATAAATAGACTTTTCTTGCTAATGAATACCTTTTTTCCATAGTTTCTAAGGCAAAC

                    * **            *                           *            
        787 ATTCAATTGTTGT-TAGTTATAACTAAAAATGAAAAAAATTCAACTTAAAATTAATTATGAG-TT
         66 ATTCAATTATAATCT-GTTATAACCAAAAATGAAAAAAATTCAACTTAAAATCAATTATGAGATT

            *                                       
        850 TTAAAACCATATAACGCGAGTAATAAGNNNNNNNNNNAAA
        130 ATAAAACCATATAACGCGAGTAATAAG----------AAA

                           *                   *    *      *                 
        890 TGGGTGACCATAAATGGACTTTTCTT-CTCAATGACTAGCTTTTTTTGCAT-GTTTCTAAGGCAA
          1 TGGGTGACCATAAATAGACTTTTCTTGCT-AATGAATA-CCTTTTTTCCATAGTTTCTAAGGCAA

            *                   *      *  * *         *                      
        953 GCATTCAATTATAATCTGTTTTAACCAGAATTTAAAAAAATTTAACTTAAAATCAATTATGAGAT
         64 ACATTCAATTATAATCTGTTATAACCAAAAATGAAAAAAATTCAACTTAAAATCAATTATGAGAT

                    
       1018 TATAAAAC
        129 TATAAAAC

       1026 AATTTAAAG


Statistics
Matches: 111,  Mismatches: 21, Indels: 7
        0.80            0.15        0.05

Matches are distributed among these distances:
 167    2  0.02
 168   90  0.81
 169   19  0.17

ACGTcount: A:0.37, C:0.12, G:0.12, T:0.36


Consensus pattern (159 bp):   
TGGGTGACCATAAATAGACTTTTCTTGCTAATGAATACCTTTTTTCCATAGTTTCTAAGGCAAAC
ATTCAATTATAATCTGTTATAACCAAAAATGAAAAAAATTCAACTTAAAATCAATTATGAGATTA
TAAAACCATATAACGCGAGTAATAAGAAA
Done.