Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018401669.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_4785.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 994

Length: 1658
ACGTcount: A:0.24, C:0.10, G:0.08, T:0.26

Warning! 523 characters in sequence are not A, C, G, or T


Found at i:1186 original size:171 final size:168

Alignment explanation


    Indices: 624--1186  Score: 446
    Period size: 171  Copynumber: 3.3  Consensus size: 168

        614 NNNNNNNNNN

                                                       *      *   *          
        624 TTCAAAAGCCTTATTACTCTCTTTAAATGGTTTTATAACCTCATAATTGAGTTTCAGTTGAATTT
          1 TTCAAAAGCCTTATTACTCTCTTTAAATGGTTTTATAACCTCAAAATTGATTTTAAGTT-AATTT

                         *   *              *                     *        * 
        689 TTTTACATTTTTACTTAGAACAGATTATAATTCAATGTTTTCCTTGAGAAAGATGAAGAAACACC
         65 TTTTACATTTTTAATTAAAACAGATTATAATTGAATGTTTTCCTTG-GAAAGATAAAGAAA-AAC

                        *     *                    * 
        754 CAATCATTGGCATGAAAAACCCATTTATAGTCACCCAAGTC
        128 CAATCATTGGCAAGAAAAGCCCATTTATAGTCACCCAAGAC

                    **  **********     **        *   *             *   * *   
        795 TTCAAAAGTATTNNNNNNNNNNTTAAACAGTTTTATAGCCTAAAAATTGATTTTAGGTTGAGTTT
          1 TTCAAAAGCCTTATTACTCTCTTTAAATGGTTTTATAACCTCAAAATTGATTTTAAGTTAATTTT

                                              *    *     *    *         *    
        860 TTTACATTTTTAATTAAAACAGATTATAATTGAACGTTTACCTTTAGAAATATAAAGAAATACAC
         66 TTTACATTTTTAATTAAAACAGATTATAATTGAATGTTTTCC-TTGGAAAGATAAAGAAAAAC-C

             *       *           *  *           *   
        925 AGTCATTGGAAAGAAAAGCCCGTTCATAGTCACCCAGGAC
        129 AATCATTGGCAAGAAAAGCCCATTTATAGTCACCCAAGAC

              *                     **********    *                          
        965 TTTATAAA-CCTTATTACTCTCTTNNNNNNNNNNTATATCCTCAAAATTGATTTTAAGTTAAATT
          1 TTCA-AAAGCCTTATTACTCTCTTTAAATGGTTTTATAACCTCAAAATTGATTTTAAGTT-AATT

                  *       *                                         *        
       1029 TTTTTATATTTTTATTTAAAACAGATTATAATTGAATGTTTTCCTTGGCAAA-ACTTAAGAAAAA
         64 TTTTTACATTTTTAATTAAAACAGATTATAATTGAATGTTTTCCTTGG-AAAGA-TAAAGAAAAA

                *      *    *                 *    * * 
       1093 GCCATTCATTGTCAAGGAAAGCCCATTTATAGTCCCCCATGCC
        127 -CCAATCATTGGCAAGAAAAGCCCATTTATAGTCACCCAAGAC

                          *                       *    *       
       1136 TTCAAAAGCCTTATCACTCTCTTTAAATGGTTTTATAATCTCATAATTGAT
          1 TTCAAAAGCCTTATTACTCTCTTTAAATGGTTTTATAACCTCAAAATTGAT

       1187 NNNNNNNNNN


Statistics
Matches: 285,  Mismatches: 99, Indels: 16
        0.71            0.25        0.04

Matches are distributed among these distances:
 169    1  0.00
 170  122  0.43
 171  161  0.56
 172    1  0.00

ACGTcount: A:0.34, C:0.15, G:0.11, T:0.36


Consensus pattern (168 bp):   
TTCAAAAGCCTTATTACTCTCTTTAAATGGTTTTATAACCTCAAAATTGATTTTAAGTTAATTTT
TTTACATTTTTAATTAAAACAGATTATAATTGAATGTTTTCCTTGGAAAGATAAAGAAAAACCAA
TCATTGGCAAGAAAAGCCCATTTATAGTCACCCAAGAC
Done.