Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018401677.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_4792.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2043
ACGTcount: A:0.24, C:0.09, G:0.07, T:0.26

Warning! 696 characters in sequence are not A, C, G, or T


Found at i:818 original size:171 final size:170

Alignment explanation


    Indices: 528--913  Score: 429
    Period size: 171  Copynumber: 2.3  Consensus size: 170

        518 NNNNNNNNNN

                                                        *         *    *     
        528 TTTATAATCTCATAATTGATTTTAAGTTAAATTTTTTTACATTTTTCTTTAAAAGAGACTATAAT
          1 TTTATAATCTCATAATTGATTTTAAGTTAAATTTTTTTACATTTCTCTTTAAAACAGACAATAAT

                   *                              *    *                **   
        593 TGAAAGCTTGCCTCAAGAAAGACATAGAAAAAGCCATTCATTGGGAAAAAAAATCCATTTTTAGT
         66 TGAAAGCAT-CCTCAAGAAAGACATAGAAAAAGCCATTAATTGAGAAAAAAAATCCATTTAGAGT

                   * **  **                            
        658 CACCCATTCTTTCGCAAGCCTTATTACTCTG-TTTAAAT-GAT
        130 CACCCATACCGTCAAAAGCCTTATTACTC-GCTTTAAATAG-T

                                   *    *                     *              
        699 TTTATAATCTCATAATTGATTTTCAGTTGAATTTTTTTACATTTCTCTTTCAAACAGACAATAAT
          1 TTTATAATCTCATAATTGATTTTAAGTTAAATTTTTTTACATTTCTCTTTAAAACAGACAATAAT

                  *       **        **       *            *  *               
        764 TGAATATCAAT-CTTGAGAAACG-TGTAGAAAAGGCCATTAATTGATAATAAAAATCCATTTAGA
         66 TGAA-AGC-ATCCTCAAGAAA-GACATAGAAAAAGCCATTAATTGAGAAAAAAAATCCATTTAGA

                                *                      
        827 GTCACCCATACCGTCAAAAGGCTTATTACTCGCTTTAAATAGT
        128 GTCACCCATACCGTCAAAAGCCTTATTACTCGCTTTAAATAGT

             *        *      *                     *    
        870 TATATAATCTAATAATTAATTTTAAGTTAAATTTTTTTATATTT
          1 TTTATAATCTCATAATTGATTTTAAGTTAAATTTTTTTACATTT

        914 NNNNNNNNNN


Statistics
Matches: 179,  Mismatches: 31, Indels: 10
        0.81            0.14        0.05

Matches are distributed among these distances:
 170    1  0.01
 171  173  0.97
 172    4  0.02
 173    1  0.01

ACGTcount: A:0.36, C:0.14, G:0.10, T:0.39


Consensus pattern (170 bp):   
TTTATAATCTCATAATTGATTTTAAGTTAAATTTTTTTACATTTCTCTTTAAAACAGACAATAAT
TGAAAGCATCCTCAAGAAAGACATAGAAAAAGCCATTAATTGAGAAAAAAAATCCATTTAGAGTC
ACCCATACCGTCAAAAGCCTTATTACTCGCTTTAAATAGT
Done.