Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018401683.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_4799.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2045
ACGTcount: A:0.26, C:0.10, G:0.09, T:0.25

Warning! 608 characters in sequence are not A, C, G, or T


Found at i:1766 original size:171 final size:169

Alignment explanation


    Indices: 1357--1810  Score: 520
    Period size: 171  Copynumber: 2.7  Consensus size: 169

       1347 NNNNNNNNNN

                                                     *                *      
       1357 TGATTTAAATTTGAATTCTTTGTACATTTTTTGTTAAAACAGATTAGAATTGAATGTCGA-CTTC
          1 TGATTTAAATTTGAATTCTTT-TACATTTTTTGTTAAAACAAATTAGAATTGAATGTCCACCTT-

            *      *           *                       *    *    *   *       
       1421 AAGAAACGTGAAGAAAAAGGTTCATTGGCAAGAAAAGTCCATTCATAGTCATCGATTTCTCCAAA
         64 GAGAAACATGAAGAAAAAGATTCATTGGCAAGAAAAGTCCATTTATAGCCATCCATTCCTCCAAA

             *                    *      *       *   
       1486 AGCCTTATTACTCACCTTAAATGGTTTCATAATCTCATAAT
        129 AACCTTATTACTCACCTTAAATAGTTTCAAAATCTCAAAAT

             *          **                           *    *                  
       1527 TCATTTTAAATTCAAATT-TTTTACATTTTTTGTTAAAACATATTATAATTGAATGTCCAGCC-T
          1 TGA-TTTAAATTTGAATTCTTTTACATTTTTTGTTAAAACAAATTAGAATTGAATGTCCA-CCTT

                                        *                                 ** 
       1590 GAGAAACATGAAGAAAAAGATTTTCATTAGCAAGAAAAGTCCATTTATAGCCATCCATTCCTTTA
         64 GAGAAACATGAAGAAAAAGA--TTCATTGGCAAGAAAAGTCCATTTATAGCCATCCATTCCTCCA

                    *   *    *           *             
       1655 AAAACCTTGTTATTCACTTTAAATAGTTTTAAAATCTCAAAAT
        127 AAAACCTTATTACTCACCTTAAATAGTTTCAAAATCTCAAAAT

                                           *                   *   *  *      
       1698 TGATTTAAATTTGAATTCTTTCTACATTTTTGGTTAAAACAAATT-GAATTAAATATCTACCTTG
          1 TGATTTAAATTTGAATTCTTT-TACATTTTTTGTTAAAACAAATTAGAATTGAATGTCCACCTTG

                                         *          *        
       1762 AGAAACATGAAGAATAAAGCATTCATTGGTAAGAAAAGTCTATTTATAG
         65 AGAAACATGAAGAA-AAAG-ATTCATTGGCAAGAAAAGTCCATTTATAG

       1811 TCACCCATAC


Statistics
Matches: 238,  Mismatches: 36, Indels: 19
        0.81            0.12        0.06

Matches are distributed among these distances:
 169   52  0.22
 170   20  0.08
 171  140  0.59
 172   25  0.11
 173    1  0.00

ACGTcount: A:0.38, C:0.14, G:0.12, T:0.37


Consensus pattern (169 bp):   
TGATTTAAATTTGAATTCTTTTACATTTTTTGTTAAAACAAATTAGAATTGAATGTCCACCTTGA
GAAACATGAAGAAAAAGATTCATTGGCAAGAAAAGTCCATTTATAGCCATCCATTCCTCCAAAAA
CCTTATTACTCACCTTAAATAGTTTCAAAATCTCAAAAT
Done.