Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018401691.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_4805.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 780

Length: 1300
ACGTcount: A:0.15, C:0.09, G:0.09, T:0.16

Warning! 667 characters in sequence are not A, C, G, or T


Found at i:1201 original size:35 final size:35

Alignment explanation


    Indices: 1135--1206  Score: 90
    Period size: 35  Copynumber: 2.1  Consensus size: 35

       1125 NNNNNNNNNN

                                 *  *       *  
       1135 CCTTCAACAATGGTTTTTCAATAGCTCAACCATAA
          1 CCTTCAACAATGGTTTTTCAAGAGATCAACCAAAA

                               **     *        
       1170 CCTTCAACAATGGTTTTTCCCGAGATTAACCAAAA
          1 CCTTCAACAATGGTTTTTCAAGAGATCAACCAAAA

              
       1205 CC
          1 CC

       1207 CAAAAACTAA


Statistics
Matches: 31,  Mismatches: 6, Indels: 0
        0.84            0.16        0.00

Matches are distributed among these distances:
  35   31  1.00

ACGTcount: A:0.33, C:0.28, G:0.10, T:0.29


Consensus pattern (35 bp):   
CCTTCAACAATGGTTTTTCAAGAGATCAACCAAAA
Done.