Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018397697.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_5644.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 531

Length: 885
ACGTcount: A:0.40, C:0.11, G:0.13, T:0.34

Warning! 20 characters in sequence are not A, C, G, or T


Found at i:858 original size:16 final size:17

Alignment explanation


    Indices: 834--871  Score: 60
    Period size: 16  Copynumber: 2.3  Consensus size: 17

        824 GATTTCATAC

                *            
        834 AAATTGTTAAAT-ATAT
          1 AAATAGTTAAATAATAT

                             
        850 AAATAGTTAAATAATAT
          1 AAATAGTTAAATAATAT

                 
        867 AAATA
          1 AAATA

        872 TAAAGAAGAA


Statistics
Matches: 20,  Mismatches: 1, Indels: 1
        0.91            0.05        0.05

Matches are distributed among these distances:
  16   11  0.55
  17    9  0.45

ACGTcount: A:0.58, C:0.00, G:0.05, T:0.37


Consensus pattern (17 bp):   
AAATAGTTAAATAATAT

Done.