Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018401698.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_4811.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 712

Length: 1188
ACGTcount: A:0.25, C:0.10, G:0.12, T:0.26

Warning! 328 characters in sequence are not A, C, G, or T


Found at i:897 original size:172 final size:172

Alignment explanation


    Indices: 494--960  Score: 503
    Period size: 172  Copynumber: 2.7  Consensus size: 172

        484 NNNNNNNNNN

                            *                             *       *          
        494 TTAAAGTCAATTATGAAATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGCAA-GCATAGG
          1 TTAAAGTCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAAGCTTTTGGAAGGCATAGG

                                  * *   *                  *                 
        558 TGACTATAAATGGACTTGTCTTACAAATGAATGGCTTTTTCTTCACGGTTCTCGAGGTAGAGATT
         66 TGACTATAAATGGACTT-TCTTGCCAATCAATGGCTTTTTCTTCACGTTTCTCGAGGTAGAGATT

                       *       *      *                
        623 TAATTATAATCTATTTGAACCAAAAATGAAAAAAAATTTCAAC
        130 TAATTATAATCCATTTGAAACAAAAACGAAAAAAAATTTCAAC

                 * *                              **********     *        *  
        666 TTAAAATTAATTATGAGATTATAAAACCATTTAAAGCGNNNNNNNNNNC-TTTCGAAGGCATGGG
          1 TTAAAGTCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAAGCTTTTGGAAGGCATAGG

                                        *                     * *        *   
        730 TGACTATAAATGGACTTTACTTGCCAATTAATGGCTTTTTCTTCACGTTTTTTGAGGTAGATATT
         66 TGACTATAAATGGACTTT-CTTGCCAATCAATGGCTTTTTCTTCACGTTTCTCGAGGTAGAGATT

                    *                        *       * 
        795 TAATTATATTCCATTTGAAACAAAAACGAAAAACAATTTC-CC
        130 TAATTATAATCCATTTGAAACAAAAACGAAAAAAAATTTCAAC

                     *   *           *          **                        *  
        837 TTAAAGTCAGTTACGAGATTATAAAGCCATTTAAAGTAAGTAATAAAGCTTTTGGAAGGCATTGG
          1 TTAAAGTCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAAGCTTTTGGAAGGCATAGG

                                          *                        *     
        902 TGACTATAAATAGG-CTTTTCTTGCCAATCCATGG-TTCTTTCTTCACGTTTCTCAAGGTA
         66 TGACTATAAAT-GGAC-TTTCTTGCCAATCAATGGCTT-TTTCTTCACGTTTCTCGAGGTA

        961 AACATTCAAT


Statistics
Matches: 236,  Mismatches: 53, Indels: 12
        0.78            0.18        0.04

Matches are distributed among these distances:
 171   41  0.17
 172  190  0.81
 173    5  0.02

ACGTcount: A:0.35, C:0.14, G:0.16, T:0.34


Consensus pattern (172 bp):   
TTAAAGTCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAAGCTTTTGGAAGGCATAGG
TGACTATAAATGGACTTTCTTGCCAATCAATGGCTTTTTCTTCACGTTTCTCGAGGTAGAGATTT
AATTATAATCCATTTGAAACAAAAACGAAAAAAAATTTCAAC
Done.