Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018401703.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_4816.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 868

Length: 1448
ACGTcount: A:0.17, C:0.07, G:0.07, T:0.19

Warning! 716 characters in sequence are not A, C, G, or T


Found at i:396 original size:171 final size:171

Alignment explanation


    Indices: 117--467  Score: 470
    Period size: 171  Copynumber: 2.1  Consensus size: 171

        107 ATTTACCACG

                     *   *     *        *                                    
        117 AGAAACGTGTAAAGAAAAGTACTCATTGGCGAGAAAAGTCTCTTTATAGCCTCTCATTCCTTCAA
          1 AGAAACGTGCAAAAAAAAGCACTCATTGACGAGAAAAGTCTCTTTATAGCCTCTCATTCCTTCAA

                                         *    * *                      *     
        182 AAGCCTTATTACTTGCTTTACATGGTTTTTTAATTTGATAATTGATTTTAGGTTGAATTGTTTTA
         66 AAGCCTTATTACTTGCTTTACATGGTTTTCTAATCTCATAATTGATTTTAGGTTGAATTATTTTA

                                                     
        247 CATTTTTGAAGAAAACAGACTATAATTGAATATTTACCTTA
        131 CATTTTTGAAGAAAACAGACTATAATTGAATATTTACCTTA

                                 *              *                            
        288 AGAAACGTGCAAAAAAAAGCATTCATTGACGAGAAATGTCTAC-TTATAGCCTCTCATTCCTTCA
          1 AGAAACGTGCAAAAAAAAGCACTCATTGACGAGAAAAGTCT-CTTTATAGCCTCTCATTCCTTCA

                               **********                                    
        352 AAAGCCTTATTACTTGCTTNNNNNNNNNNTCTAATCTCATAATTGATTTTAGGTTGAATTATTTT
         65 AAAGCCTTATTACTTGCTTTACATGGTTTTCTAATCTCATAATTGATTTTAGGTTGAATTATTTT

             *        **                             *
        417 AGATTTTTGATTAAAACAGACTATAATTGAATATTTACCTTG
        130 ACATTTTTGAAGAAAACAGACTATAATTGAATATTTACCTTA

                     
        459 AGAAACGTG
          1 AGAAACGTG

        468 AAGAANNNNN


Statistics
Matches: 155,  Mismatches: 24, Indels: 2
        0.86            0.13        0.01

Matches are distributed among these distances:
 171  154  0.99
 172    1  0.01

ACGTcount: A:0.33, C:0.14, G:0.14, T:0.37


Consensus pattern (171 bp):   
AGAAACGTGCAAAAAAAAGCACTCATTGACGAGAAAAGTCTCTTTATAGCCTCTCATTCCTTCAA
AAGCCTTATTACTTGCTTTACATGGTTTTCTAATCTCATAATTGATTTTAGGTTGAATTATTTTA
CATTTTTGAAGAAAACAGACTATAATTGAATATTTACCTTA
Done.