Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018401707.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_4821.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 686

Length: 1144
ACGTcount: A:0.33, C:0.25, G:0.12, T:0.31


Found at i:699 original size:44 final size:44

Alignment explanation


    Indices: 650--740  Score: 173
    Period size: 44  Copynumber: 2.1  Consensus size: 44

        640 ATTAGCCTAT

                                                        
        650 GCATCCTTATCTAGGCGCATAATCATTTTCATTCTCTAACATAG
          1 GCATCCTTATCTAGGCGCATAATCATTTTCATTCTCTAACATAG

                                                 *      
        694 GCATCCTTATCTAGGCGCATAATCATTTTCATTCTCTGACATAG
          1 GCATCCTTATCTAGGCGCATAATCATTTTCATTCTCTAACATAG

               
        738 GCA
          1 GCA

        741 CATACCTCTA


Statistics
Matches: 46,  Mismatches: 1, Indels: 0
        0.98            0.02        0.00

Matches are distributed among these distances:
  44   46  1.00

ACGTcount: A:0.26, C:0.25, G:0.13, T:0.35


Consensus pattern (44 bp):   
GCATCCTTATCTAGGCGCATAATCATTTTCATTCTCTAACATAG

Done.