Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018401709.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_4823.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6320
ACGTcount: A:0.35, C:0.15, G:0.17, T:0.34


Found at i:1663 original size:15 final size:15

Alignment explanation


    Indices: 1643--1687  Score: 90
    Period size: 15  Copynumber: 3.0  Consensus size: 15

       1633 AGAAGGAAAT

                           
       1643 TCCAATGACAATTGC
          1 TCCAATGACAATTGC

                           
       1658 TCCAATGACAATTGC
          1 TCCAATGACAATTGC

                           
       1673 TCCAATGACAATTGC
          1 TCCAATGACAATTGC

       1688 CCCATCTATT


Statistics
Matches: 30,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  15   30  1.00

ACGTcount: A:0.33, C:0.27, G:0.13, T:0.27


Consensus pattern (15 bp):   
TCCAATGACAATTGC
Done.