Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018401715.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_4829.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2105
ACGTcount: A:0.18, C:0.07, G:0.06, T:0.20

Warning! 1033 characters in sequence are not A, C, G, or T


Found at i:1857 original size:171 final size:170

Alignment explanation


    Indices: 1563--2105  Score: 673
    Period size: 171  Copynumber: 3.2  Consensus size: 170

       1553 NNNNNNNNNN

                                      *       *     *      *             *   
       1563 TTTT-TAATCTCATAATTGATTTTAACTTGAATTGTTTTACATTTTTGATTAAAACAGGA-AATA
          1 TTTTATAATCTCATAATTGATTTTAAGTTGAATTTTTTTATATTTTTCATTAAAACA-GACTATA

                                   *     *      *                         *  
       1626 ATTGAATGTCTATCTTGAGAAACGTGAAGGAAAAAGTATTCA-TGATCAAGAAAAGTCCATTCAT
         65 ATTGAATGTCTATCTTGAG-AACATGAAGAAAAAAGCATTCATTGAT-AAGAAAAGTCCATTTAT

                *  *    *                 *      *     
       1690 AGTCACCTATTCTTTTAAAAGCCTTTTTACACGCTTTGAATGG
        128 AGTCTCCCATTCCTTTAAAAGCCTTTTTACTCGCTTTAAATGG

                     *                                                       
       1733 TTTTATAATGTCATAATTGATTTTAAGTTGAATATTTTTTATATTTTTCATT-AAACAGACTATA
          1 TTTTATAATCTCATAATTGATTTTAAGTTGAAT-TTTTTTATATTTTTCATTAAAACAGACTATA

                  *  *        *                                            * 
       1797 ATTGAACGTTTATCTTGACAATCATGAAGAAAAAAGCATTCATTGATAAGAAAAGTCCATTTAAA
         65 ATTGAATGTCTATCTTGAGAA-CATGAAGAAAAAAGCATTCATTGATAAGAAAAGTCCATTTATA

             *              **                         
       1862 GCCTCCCATTCCTTTATTAGCCTTTTTACTCG-TTCTAAATGG
        129 GTCTCCCATTCCTTTAAAAGCCTTTTTACTCGCTT-TAAATGG

               *              *          *                                   
       1904 TTTCATAATCTCATAATTAATTTTAAGTTTAATTTTTTTATATTTTTCATTAAAACAGACTATAA
          1 TTTTATAATCTCATAATTGATTTTAAGTTGAATTTTTTTATATTTTTCATTAAAACAGACTATAA

                      **        *                       **                   
       1969 TTGAATGTCTGCCTTGAGAAAAGTGAAGAAAAAAGCATTCATTGGCAAGAAAAGTCCATTTATAG
         66 TTGAATGTCTATCTTGAGAACA-TGAAGAAAAAAGCATTCATTGATAAGAAAAGTCCATTTATAG

                         **  *           *           
       2034 TCTCCCATTCCTTCGAAGGCCTTTTTACTTGCTTTAAATGG
        130 TCTCCCATTCCTTTAAAAGCCTTTTTACTCGCTTTAAATGG

                       *                   
       2075 TTTTATAATCTAATAATTGATTTTAAGTTGA
          1 TTTTATAATCTCATAATTGATTTTAAGTTGA


Statistics
Matches: 318,  Mismatches: 46, Indels: 17
        0.83            0.12        0.04

Matches are distributed among these distances:
 170   29  0.09
 171  268  0.84
 172   21  0.07

ACGTcount: A:0.34, C:0.13, G:0.13, T:0.40


Consensus pattern (170 bp):   
TTTTATAATCTCATAATTGATTTTAAGTTGAATTTTTTTATATTTTTCATTAAAACAGACTATAA
TTGAATGTCTATCTTGAGAACATGAAGAAAAAAGCATTCATTGATAAGAAAAGTCCATTTATAGT
CTCCCATTCCTTTAAAAGCCTTTTTACTCGCTTTAAATGG
Done.