Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018401723.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_4838.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 791

Length: 1319
ACGTcount: A:0.35, C:0.14, G:0.17, T:0.34


Found at i:422 original size:16 final size:15

Alignment explanation


    Indices: 401--430  Score: 51
    Period size: 15  Copynumber: 1.9  Consensus size: 15

        391 AAAAGAAACA

                            
        401 TCTCCTTACTTCTTCC
          1 TCTCCTT-CTTCTTCC

                          
        417 TCTCCTTCTTCTTC
          1 TCTCCTTCTTCTTC

        431 TACTGCTACT


Statistics
Matches: 14,  Mismatches: 0, Indels: 1
        0.93            0.00        0.07

Matches are distributed among these distances:
  15    7  0.50
  16    7  0.50

ACGTcount: A:0.03, C:0.43, G:0.00, T:0.53


Consensus pattern (15 bp):   
TCTCCTTCTTCTTCC
Done.