Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018401737.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_4852.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1688
ACGTcount: A:0.23, C:0.07, G:0.15, T:0.20

Warning! 596 characters in sequence are not A, C, G, or T


Found at i:71 original size:31 final size:31

Alignment explanation


    Indices: 31--114  Score: 123
    Period size: 31  Copynumber: 2.7  Consensus size: 31

         21 AATGGGTATA

                                           
         31 TACATTGCCAGCCCAAGGTTGAATAGGGATG
          1 TACATTGCCAGCCCAAGGTTGAATAGGGATG

               *       *       *    *      
         62 TACGTTGCCAGTCCAAGGTGGAATGGGGATG
          1 TACATTGCCAGCCCAAGGTTGAATAGGGATG

                       *          
         93 TACATTGCCAGGCCAAGGTTGA
          1 TACATTGCCAGCCCAAGGTTGA

        115 TGGGGGTCAA


Statistics
Matches: 46,  Mismatches: 7, Indels: 0
        0.87            0.13        0.00

Matches are distributed among these distances:
  31   46  1.00

ACGTcount: A:0.26, C:0.19, G:0.32, T:0.23


Consensus pattern (31 bp):   
TACATTGCCAGCCCAAGGTTGAATAGGGATG
Done.