Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018401744.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_4859.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 931

Length: 1552
ACGTcount: A:0.23, C:0.07, G:0.08, T:0.21

Warning! 631 characters in sequence are not A, C, G, or T


Found at i:491 original size:172 final size:170

Alignment explanation


    Indices: 118--509  Score: 462
    Period size: 172  Copynumber: 2.3  Consensus size: 170

        108 NNNNNNNNNN

                        *         *  *                     *   *   *         
        118 AGATTATAAAACTATTTAAAGAGAGCAATAAGCCTTTTGAAGGAATGGGTGGCTATAAATGGACT
          1 AGATTATAAAACCATTTAAA-ACAGTAATAAGCCTTTTGAAGGAATGAGTGACTAAAAATGGACT

               *         *                     * *   *       *     *     *   
        183 TTTTTTTTCAATGCATAGCTTTTTTTAGACGTTTCTCGAGATAAAAATTTAATTATAGTCTGTTA
         65 TTTGTTTTCAATGAATAGCTTTTTTTAGACGTTTCCCAAGACAAAAATTGAATTACAGTCTATTA

               *       **                    *       
        248 TAATAAAAAATGTAAAAAAATTTAACTTAAAATTAATTAAG
        130 TAACAAAAAATACAAAAAAATTTAACTTAAAATCAATTAAG

                  *   *         *                *                           
        289 AGATTACAAACCCATTTAAACCGAGTAATAAGCCTTTCGAAGGAATGAGTGACTAAAAATGGACT
          1 AGATTATAAAACCATTTAAAAC-AGTAATAAGCCTTTTGAAGGAATGAGTGACTAAAAATGGACT

                                                      *  ***                 
        354 TTTGTTTTCAATGAATAAGCTTTTTTT-GCACGTTTCCCAAGGCAGGTATTGAATTACAGTCTAT
         65 TTTGTTTTCAATGAAT-AGCTTTTTTTAG-ACGTTTCCCAAGACAAAAATTGAATTACAGTCTAT

             *         *                             * 
        418 TTTAACAAAAATTACAAAAAAATTTAACTTAAAATCAATTATG
        128 TATAACAAAAAATACAAAAAAATTTAACTTAAAATCAATTAAG

                            *                                
        461 AGATTATAAAACCATTCAAAACATGTAATAAGCCTTTTGAAGGAATGAG
          1 AGATTATAAAACCATTTAAAACA-GTAATAAGCCTTTTGAAGGAATGAG

        510 NNNNNNNNNN


Statistics
Matches: 183,  Mismatches: 34, Indels: 7
        0.82            0.15        0.03

Matches are distributed among these distances:
 171   70  0.38
 172  113  0.62

ACGTcount: A:0.40, C:0.11, G:0.15, T:0.34


Consensus pattern (170 bp):   
AGATTATAAAACCATTTAAAACAGTAATAAGCCTTTTGAAGGAATGAGTGACTAAAAATGGACTT
TTGTTTTCAATGAATAGCTTTTTTTAGACGTTTCCCAAGACAAAAATTGAATTACAGTCTATTAT
AACAAAAAATACAAAAAAATTTAACTTAAAATCAATTAAG
Done.