genome.fa.s450.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397703.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_1000.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  14250

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4--1969	171	11.5	171	77	6	1694	38	13	13	34	1.83
4--1957	341	5.7	340	78	7	1672	38	13	13	34	1.83
2266--2557	154	1.9	152	80	9	342	37	14	15	32	1.88
2473--2786	169	1.9	159	81	0	295	37	13	14	31	1.84
2405--3204	171	4.7	168	77	3	638	38	13	13	33	1.84
3066--3332	142	1.9	142	83	1	347	43	11	13	31	1.79
3208--8259	171	29.5	171	76	6	3796	38	13	13	34	1.83
9896--10534	342	1.9	342	82	3	822	36	12	14	35	1.85
9896--10543	171	3.8	171	79	5	684	36	12	14	35	1.85
10720--11833	171	6.6	170	79	5	1053	38	13	12	34	1.83
10720--12431	339	5.0	336	75	10	1148	39	13	12	34	1.82
11820--11863	22	2.0	23	86	4	63	70	6	4	18	1.27
11650--12028	194	2.0	194	80	4	442	43	11	11	33	1.77
12054--12433	170	2.2	170	81	5	464	38	15	12	33	1.85
11310--12339	535	1.9	533	80	3	1167	39	13	12	33	1.82
11843--12433	170	3.5	169	76	5	449	39	13	11	32	1.81
12644--13624	341	2.9	338	78	7	878	38	13	11	36	1.81
12640--13624	171	5.8	171	75	8	652	38	13	11	36	1.81
13749--14250	171	2.9	170	82	4	591	35	14	14	35	1.86

Tables:   1

The End!