Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018401774.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_4886.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 942

Length: 1570
ACGTcount: A:0.26, C:0.08, G:0.09, T:0.25

Warning! 496 characters in sequence are not A, C, G, or T


Found at i:1557 original size:172 final size:171

Alignment explanation


    Indices: 1190--1561  Score: 406
    Period size: 171  Copynumber: 2.2  Consensus size: 171

       1180 NNNNNCATTC

                                                               *  * *  *     
       1190 AACTTAAAATCAATTTTGAGATTATAAAACCATTTAAAGTCAGTAATAAGATTTTTGAAGGAATG
          1 AACTTAAAATCAATTTTGAGATTAT-AAACCATTTAAAGTCAGTAATAAGACTTCTAAAAGAATG

                                                           *         *       
       1255 GAAGACTATAAATGAACCTTTCTTACCAATGAATGTCTTTTTTTTCATGTTTCTTAATGTAGACA
         65 GAAGACTATAAATGAACCTTTCTTACCAATGAATGTCTTTTTTTTCACGTTTCTTAAGGTAGACA

                                                  ****
       1320 TTCAATTATAATCTGTTTTAACCAAAAAAGTAAAACAANNNN
        130 TTCAATTATAATCTGTTTTAACCAAAAAAGTAAAACAAATTT

            ******                                 *         *               
       1362 NNNNNNAAATCAATTTTGAGATTATAAACCATTTAAAGTGAGTAATAAGGCTTCTAAAAGAATGG
          1 AACTTAAAATCAATTTTGAGATTATAAACCATTTAAAGTCAGTAATAAGACTTCTAAAAGAATGG

            **               *      ***           *               *  *      *
       1427 GTGACTATAAATTG-ACTTTTCTTGTTAATGAATGTATTTTTTTTTTCACGTTTTTTGAGGTAGG
         66 AAGACTATAAA-TGAACCTTTCTTACCAATGAATG--TCTTTTTTTTCACGTTTCTTAAGGTAGA

                        *            *    *             
       1491 CATTCAATTATAGTCTGTTTTAACCTAAAATGTAAAAC-AATTT
        128 CATTCAATTATAATCTGTTTTAACCAAAAAAGTAAAACAAATTT

                           *            
       1534 AACTTAAAATCAATTATGAGATTATAAA
          1 AACTTAAAATCAATTTTGAGATTATAAA

       1562 ATTATTTAA


Statistics
Matches: 159,  Mismatches: 38, Indels: 6
        0.78            0.19        0.03

Matches are distributed among these distances:
 171   59  0.37
 172   43  0.27
 173   57  0.36

ACGTcount: A:0.38, C:0.10, G:0.12, T:0.37


Consensus pattern (171 bp):   
AACTTAAAATCAATTTTGAGATTATAAACCATTTAAAGTCAGTAATAAGACTTCTAAAAGAATGG
AAGACTATAAATGAACCTTTCTTACCAATGAATGTCTTTTTTTTCACGTTTCTTAAGGTAGACAT
TCAATTATAATCTGTTTTAACCAAAAAAGTAAAACAAATTT
Done.