Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018401775.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_4887.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3507
ACGTcount: A:0.29, C:0.17, G:0.21, T:0.33


Found at i:560 original size:31 final size:29

Alignment explanation


    Indices: 515--591  Score: 77
    Period size: 31  Copynumber: 2.6  Consensus size: 29

        505 ATTAAATATT

                                            
        515 ATTAACAAAA-TAAATTAACAAAATTTTTAAA
          1 ATTAA-AAAATTAAATTAACAAAATTTTT--A

                             ****        
        546 ATTAAAAAATTAAATTATTTTAATTTTTA
          1 ATTAAAAAATTAAATTAACAAAATTTTTA

                              
        575 A-TAAAAAATTAAATTAA
          1 ATTAAAAAATTAAATTAA

        592 ATAAAAATAA


Statistics
Matches: 40,  Mismatches: 5, Indels: 5
        0.80            0.10        0.10

Matches are distributed among these distances:
  28   15  0.38
  29    2  0.05
  30    4  0.10
  31   19  0.47

ACGTcount: A:0.58, C:0.03, G:0.00, T:0.39


Consensus pattern (29 bp):   
ATTAAAAAATTAAATTAACAAAATTTTTA
Done.