Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018401779.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_4890.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 717

Length: 1195
ACGTcount: A:0.37, C:0.12, G:0.14, T:0.36

Warning! 10 characters in sequence are not A, C, G, or T


Found at i:585 original size:172 final size:171

Alignment explanation


    Indices: 128--1068  Score: 896
    Period size: 172  Copynumber: 5.5  Consensus size: 171

        118 NNNNNNNNNT

                                               *      *    *     *  *        
        128 AAATCAATTTTGAGATTATAAAACCATTTAAAGTGCGTAATAGGGCTCTTGAAAGAGTGGGTGAC
          1 AAATCAATTTTGAGATTATAAAACCATTTAAAGTGAGTAATAAGGCTTTTGAAGGAATGGGTGAC

                         *    **                   *  *         *    *       
        193 TATAAATGGACTTCTCTTGTCAATGAATGC-CTTTTTCTATACGTTTCTCAAAGTAGGCATTCAA
         66 TATAAATGGACTTTTCTTACCAATGAATGCTC-TTTTCTTTATGTTTCTCAAGGTAGACATTCAA

               *                   *   *    *           
        257 TTAGAGCT-T-TTTTAACCAAAATAT-AAAAAAAATTCAACTTA
        130 TTATA-CTCTGTTTTAA-CAAAAAATGTAAAAGAATTCAACTTA

                     *         **    *        *                     *    *   
        298 AAATCAATTATG-GCATTACGAAACTATTTAAAGCGAGTAATAAGGCTTTTGAAGGTATGGCTGA
          1 AAATCAATTTTGAG-ATTATAAAACCATTTAAAGTGAGTAATAAGGCTTTTGAAGGAATGGGTGA

              *      *                    *  *       *                       
        362 CTGTAAATAAGACTTTTCTTACCAATGAATACTTTTTTCTTAATGTTTCTCAAGGTAGACATTCA
         65 CTATAAAT-GGACTTTTCTTACCAATGAATGCTCTTTTCTTTATGTTTCTCAAGGTAGACATTCA

               *    *                               *  *
        427 ATTCTACTATGTTTTAACAAAAAATGTACAAAGAATTCAAATTT
        129 ATTATACTCTGTTTTAACAAAAAATGTA-AAAGAATTCAACTTA

                *                               *      *               *     
        471 AAATGAATTTTGAGATTATAAAACCATTTAAAGTGATTAATAAAGCTTTTGAAGGAATGTGTGAC
          1 AAATCAATTTTGAGATTATAAAACCATTTAAAGTGAGTAATAAGGCTTTTGAAGGAATGGGTGAC

                         *    *              **                              
        536 TATAAATGGACTTATCTTGCCAATGAATGCTCTCATCTTTATGTTTCTCAAGGTAGACATTCAAT
         66 TATAAATGGACTTTTCTTACCAATGAATGCTCTTTTCTTTATGTTTCTCAAGGTAGACATTCAAT

                * *           *      *    *     *      
        601 TATAATTTGTTTTAACCAGAAAA-GCAAAACAATTTGAACTTA
        131 TATACTCTGTTTTAA-CAAAAAATGTAAAAGAA-TTCAACTTA

                                                *            *    *          
        643 AAATCAATTTTGAGATTATAAAACCATTTAAAGTGATTAATAAGGCTTTGGAAGCAATGGGTGAC
          1 AAATCAATTTTGAGATTATAAAACCATTTAAAGTGAGTAATAAGGCTTTTGAAGGAATGGGTGAC

                   *       *        *   *  *       *          *    * *       
        708 TATAAATAGACTTTTTTTACCAATAAATACTTTTTTCTTCATGTTTCTCATGGTATAGATTCAAT
         66 TATAAATGGACTTTTCTTACCAATGAATGCTCTTTTCTTTATGTTTCTCAAGGTAGACATTCAAT

             *  *   *      **                      *  *
        773 TGTAGTCTATTTTAATTAAAAATGTATAAA-ACATTCAAATTT
        131 TATACTCTGTTTTAACAAAAAATGTA-AAAGA-ATTCAACTTA

                       *                    * *            *          *      
        815 AAATCAATTTTCAGATTATAAAACCATTTAAACTAAGTAATAAGGCTCTTGAAGGAATAGGTGAC
          1 AAATCAATTTTGAGATTATAAAACCATTTAAAGTGAGTAATAAGGCTTTTGAAGGAATGGGTGAC

                    *                            *   **    * * *             
        880 TATAAATGAACTTTTCTTACCAATGAATGC-CTTTTTATTTGCGTTTATTAGGGTAGACATTCAA
         66 TATAAATGGACTTTTCTTACCAATGAATGCTC-TTTTCTTTATGTTTCTCAAGGTAGACATTCAA

                 *           *    * *        *        
        944 TTATAGTCTGTTTTAACCAAAAGTATAAAAGAAATCAACTTA
        130 TTATACTCTGTTTTAACAAAAAATGTAAAAGAATTCAACTTA

                     *         *     *           *                    *      
        986 AAATCAATTATG-GCATTACAAAACTATTTAAAGCT-TGTAAT-AGAGCTTTTGAAGGTATGGGT
          1 AAATCAATTTTGAG-ATTATAAAACCATTTAAAG-TGAGTAATAAG-GCTTTTGAAGGAATGGGT

                                 
       1048 GACTATAAATGGACTTTTCTT
         63 GACTATAAATGGACTTTTCTT

       1069 GTCAATATAT


Statistics
Matches: 622,  Mismatches: 131, Indels: 35
        0.79            0.17        0.04

Matches are distributed among these distances:
 169    1  0.00
 170   62  0.10
 171  141  0.23
 172  337  0.54
 173   80  0.13
 174    1  0.00

ACGTcount: A:0.37, C:0.12, G:0.14, T:0.36


Consensus pattern (171 bp):   
AAATCAATTTTGAGATTATAAAACCATTTAAAGTGAGTAATAAGGCTTTTGAAGGAATGGGTGAC
TATAAATGGACTTTTCTTACCAATGAATGCTCTTTTCTTTATGTTTCTCAAGGTAGACATTCAAT
TATACTCTGTTTTAACAAAAAATGTAAAAGAATTCAACTTA
Done.