Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018401782.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_4893.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1767
ACGTcount: A:0.19, C:0.08, G:0.06, T:0.21

Warning! 794 characters in sequence are not A, C, G, or T


Found at i:969 original size:170 final size:170

Alignment explanation


    Indices: 678--1062  Score: 504
    Period size: 170  Copynumber: 2.3  Consensus size: 170

        668 ATAGTCTTCT

                        *                                                    
        678 ATTCCTTCAAAACCCTTATTACTCGCTTTAAATGGTTTTATAATCTAATAACTAATTTTAAGTTG
          1 ATTCCTTCAAAAGCCTTATTACTCGCTTTAAATGGTTTTATAATCTAATAACTAATTTTAAGTTG

             *      *       **      *            *       *                   
        743 ATTTTTTTTACATTTTGGTTAAAACAGACTAAAATTGTATGTCTATCTTAAGAAACAT-GATGAA
         66 AATTTTTTAACATTTTCCTTAAAAAAGACTAAAATTGAATGTCTACCTTAAGAAACATGGA-GAA

                       *                  *          
        807 AAAAGCATTCATTGGTAAGAAAAGTCCATTTACAGACACTC
        130 AAAAGCATTCAATGGTAAGAAAAGTCCATTCACAGACACTC

                    *         *                           *    * *           
        848 ATTCCTTCCAAAGCCTTACTACTCGCTTTAAATGGTTTTATAATCTCATAATTGATTTT-AGTTG
          1 ATTCCTTCAAAAGCCTTATTACTCGCTTTAAATGGTTTTATAATCTAATAACTAATTTTAAGTTG

                                            * *          *    *              
        912 AATTTTTTAACATTTTTCCTTAAAAAAGACTATACTTGAATGTCTGCCTTTAGAAACATGGAGAA
         66 AATTTTTTAACA-TTTTCCTTAAAAAAGACTAAAATTGAATGTCTACCTTAAGAAACATGGAGAA

                 *                   *     **  * *   
        977 AAAAGTATTCAATGGTAAGAAAAGTGCATTCGTAGTCTCTC
        130 AAAAGCATTCAATGGTAAGAAAAGTCCATTCACAGACACTC

                                    *                    
       1018 ATTCCTTCAAAAGCCTTATTACTCACTTTAAATGGTTTTATAATC
          1 ATTCCTTCAAAAGCCTTATTACTCGCTTTAAATGGTTTTATAATC

       1063 NNNNNNNNNN


Statistics
Matches: 185,  Mismatches: 28, Indels: 4
        0.85            0.13        0.02

Matches are distributed among these distances:
 169   15  0.08
 170  168  0.91
 171    2  0.01

ACGTcount: A:0.34, C:0.16, G:0.12, T:0.38


Consensus pattern (170 bp):   
ATTCCTTCAAAAGCCTTATTACTCGCTTTAAATGGTTTTATAATCTAATAACTAATTTTAAGTTG
AATTTTTTAACATTTTCCTTAAAAAAGACTAAAATTGAATGTCTACCTTAAGAAACATGGAGAAA
AAAGCATTCAATGGTAAGAAAAGTCCATTCACAGACACTC
Done.