Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018401796.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_4905.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2874
ACGTcount: A:0.36, C:0.21, G:0.17, T:0.26


Found at i:28 original size:6 final size:6

Alignment explanation


    Indices: 17--56  Score: 71
    Period size: 6  Copynumber: 6.7  Consensus size: 6

          7 ACACCTAGCA

                                                    *     
         17 GAGAGG GAGAGG GAGAGG GAGAGG GAGAGG GAGAGA GAGA
          1 GAGAGG GAGAGG GAGAGG GAGAGG GAGAGG GAGAGG GAGA

         57 AATCATATGA


Statistics
Matches: 33,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
   6   33  1.00

ACGTcount: A:0.38, C:0.00, G:0.62, T:0.00


Consensus pattern (6 bp):   
GAGAGG

Done.