Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018401801.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_491.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4334
ACGTcount: A:0.19, C:0.07, G:0.07, T:0.21

Warning! 2015 characters in sequence are not A, C, G, or T


Found at i:1755 original size:20 final size:22

Alignment explanation


    Indices: 1725--1765  Score: 59
    Period size: 21  Copynumber: 2.0  Consensus size: 22

       1715 CAGGAAACAT

                                  
       1725 GTAGAAAAAG-TCATTCATTGA
          1 GTAGAAAAAGTTCATTCATTGA

                            *    
       1746 GTAG-AAAAGTTCATTTATTG
          1 GTAGAAAAAGTTCATTCATTG

       1766 TCTCTCATTC


Statistics
Matches: 18,  Mismatches: 1, Indels: 2
        0.86            0.05        0.10

Matches are distributed among these distances:
  20    5  0.28
  21   13  0.72

ACGTcount: A:0.39, C:0.07, G:0.20, T:0.34


Consensus pattern (22 bp):   
GTAGAAAAAGTTCATTCATTGA

Found at i:2098 original size:20 final size:22

Alignment explanation


    Indices: 2068--2108  Score: 59
    Period size: 21  Copynumber: 2.0  Consensus size: 22

       2058 CAGGAAACGT

                                  
       2068 GTAGAAAAAG-TCATTCATTGA
          1 GTAGAAAAAGTTCATTCATTGA

                            *    
       2089 GTAG-AAAAGTTCATTTATTG
          1 GTAGAAAAAGTTCATTCATTG

       2109 TNNNNNNNNN


Statistics
Matches: 18,  Mismatches: 1, Indels: 2
        0.86            0.05        0.10

Matches are distributed among these distances:
  20    5  0.28
  21   13  0.72

ACGTcount: A:0.39, C:0.07, G:0.20, T:0.34


Consensus pattern (22 bp):   
GTAGAAAAAGTTCATTCATTGA
Done.