Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018401819.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_4926.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 850

Length: 1417
ACGTcount: A:0.25, C:0.09, G:0.08, T:0.26

Warning! 472 characters in sequence are not A, C, G, or T


Found at i:352 original size:170 final size:169

Alignment explanation


    Indices: 1--426  Score: 482
    Period size: 170  Copynumber: 2.5  Consensus size: 169

                 *    *   *         **      *             *    *         *   
          1 AAATAGTTTTTTAATCTCATAATTACTTTTAAGTTGAACTTTTTTACATTTATTATTAAAATAGA
          1 AAATAATTTTATAACCTCATAATTTGTTTTAATTTGAA-TTTTTTATATTTTTTATTAAAACAGA

                                                         *     *        * *  
         66 TTATAATT-ACATGTTTACCTCGACAAATGTGAAAAAAAGATATCGATTAGTAAGAAAAGGCTAT
         65 TTATAATTGA-ATGTTTACCTCGACAAATGTGAAAAAAAGATATCCATTAGCAAGAAAAGACCAT

                       *                             
        130 TTATAGTCACCGATACCTTCAAAAGCCTTATTACTCGCTCT
        129 TTATAGTCACCCATACCTTCAAAAGCCTTATTACTCGCTCT

                *                                                 *          
        171 AAATGATTTTATAACCTCATAATTTGTTTTAATTTGAATTGTTTTATATTTTTTGTTAAAACAGA
          1 AAATAATTTTATAACCTCATAATTTGTTTTAATTTGAATT-TTTTATATTTTTTATTAAAACAGA

                            *   *  *             *  *         *              
        236 TTATAATTGAATGTTTTCCTTGAGAAACT-TGAAGAAGAATATATCCATTGGCAAGAAAAGACCA
         65 TTATAATTGAATGTTTACCTCGACAAA-TGTGAA-AAAAAGATATCCATTAGCAAGAAAAGACCA

                           * *  *      *  *         * 
        300 TTTATAGTCACCCATGCTTTTAAAAGCTTTTTTA-TCGCTTT
        128 TTTATAGTCACCCATACCTTCAAAAGCCTTATTACTCGCTCT

                                                  *      *                   
        341 AAATAATTTTATAACCTCATAA-TTGATTTTAATTTGATTTTTTTTTATTTTTTTATTAAAACAG
          1 AAATAATTTTATAACCTCATAATTTG-TTTTAATTTGAATTTTTTATA-TTTTTTATTAAAACAG

                           *      
        405 ATTATAATTGAATGTGTACCTC
         64 ATTATAATTGAATGTTTACCTC

        427 CAAAAACGTN


Statistics
Matches: 215,  Mismatches: 35, Indels: 12
        0.82            0.13        0.05

Matches are distributed among these distances:
 169   11  0.05
 170  151  0.70
 171   53  0.25

ACGTcount: A:0.35, C:0.12, G:0.11, T:0.42


Consensus pattern (169 bp):   
AAATAATTTTATAACCTCATAATTTGTTTTAATTTGAATTTTTTATATTTTTTATTAAAACAGAT
TATAATTGAATGTTTACCTCGACAAATGTGAAAAAAAGATATCCATTAGCAAGAAAAGACCATTT
ATAGTCACCCATACCTTCAAAAGCCTTATTACTCGCTCT
Done.