Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018401823.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_4930.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 763

Length: 1273
ACGTcount: A:0.28, C:0.09, G:0.10, T:0.27

Warning! 333 characters in sequence are not A, C, G, or T


Found at i:819 original size:24 final size:24

Alignment explanation


    Indices: 746--820  Score: 68
    Period size: 24  Copynumber: 3.1  Consensus size: 24

        736 TTTCAATTAC

                                     
        746 AATCTGTTTTAACCAATAATGTAAA
          1 AATCTGTTTTAACCAATAATGT-AA

                         *              
        771 AATCTGTTTCT--TC-ATGCCAAT-TAA
          1 AATCTGTTT-TAACCAAT---AATGTAA

                                    
        795 AATCTGTTTTAACCAATAATGTAA
          1 AATCTGTTTTAACCAATAATGTAA

              
        819 AA
          1 AA

        821 AAATTTATTT


Statistics
Matches: 40,  Mismatches: 2, Indels: 17
        0.68            0.03        0.29

Matches are distributed among these distances:
  23    6  0.15
  24   17  0.43
  25   11  0.28
  26    6  0.15

ACGTcount: A:0.40, C:0.15, G:0.08, T:0.37


Consensus pattern (24 bp):   
AATCTGTTTTAACCAATAATGTAA
Done.