Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018401847.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_4953.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 901

Length: 1503
ACGTcount: A:0.16, C:0.06, G:0.06, T:0.16

Warning! 853 characters in sequence are not A, C, G, or T


Found at i:37 original size:20 final size:20

Alignment explanation


    Indices: 9--53  Score: 83
    Period size: 20  Copynumber: 2.3  Consensus size: 20

          1 GTTACGAA

                                
          9 AAAAG-TATTCATTATCAAG
          1 AAAAGTTATTCATTATCAAG

                                
         28 AAAAGTTATTCATTATCAAG
          1 AAAAGTTATTCATTATCAAG

                  
         48 AAAAGT
          1 AAAAGT

         54 CTGTTTATAG


Statistics
Matches: 25,  Mismatches: 0, Indels: 1
        0.96            0.00        0.04

Matches are distributed among these distances:
  19    5  0.20
  20   20  0.80

ACGTcount: A:0.49, C:0.09, G:0.11, T:0.31


Consensus pattern (20 bp):   
AAAAGTTATTCATTATCAAG
Done.