Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018401852.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_4958.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3113
ACGTcount: A:0.17, C:0.07, G:0.06, T:0.18

Warning! 1628 characters in sequence are not A, C, G, or T


Found at i:1888 original size:171 final size:162

Alignment explanation


    Indices: 1688--1999  Score: 303
    Period size: 171  Copynumber: 1.9  Consensus size: 162

       1678 NNNNNNNNNN

                     *     *                         *     *             *  *
       1688 AGTTGAATTTTTTTATATTTTTGATTAAAACATG-CTATAATTGAATGTCTACCTT-GAGACACG
          1 AGTTGAATTATTTTACATTTTTGATTAAAACA-GACTATAAGTGAATATCTACCTTGGA-AAACA

                                 *     *   *                                 
       1751 TGAAGAAACAAGAT-TTCATTGAC-AAGAAAGGTCCATTTAAAGTCACCCATTCCTTCTAAAAG-
         64 TGAAGAAA-AAGATATTCATTAACAAAAAAAAGTCCATTTAAAGTCACCCATTCCTTC-AAAAGT

                    *                                     
       1813 CTTATTACTCGCTTTAAACAATTTTANNNNNNNNNNATTGATTTTA
        127 CTTATTACCCGCTTTAAACAATTTTA----------ATTGATTTTA

                                                         *                   
       1859 AGTTGAATTATTTTACA-TTTTGTATTAAAACAGACTATAAGTGATTATCTACCTTGGAAAACAT
          1 AGTTGAATTATTTTACATTTTTG-ATTAAAACAGACTATAAGTGAATATCTACCTTGGAAAACAT

             *        *                   *        *      *                  
       1923 GCAGAAAAAGCTATTCATTAACAAAAAAAATTCCATTTATAGTCACTCATTCCTTCAAAAGTCTT
         65 GAAGAAAAAGATATTCATTAACAAAAAAAAGTCCATTTAAAGTCACCCATTCCTTCAAAAGTCTT

                        
       1988 ATTACCCGCTTT
        130 ATTACCCGCTTT

       2000 NNNNNNNNNN


Statistics
Matches: 119,  Mismatches: 16, Indels: 11
        0.82            0.11        0.08

Matches are distributed among these distances:
 170   10  0.08
 171   65  0.55
 172   44  0.37

ACGTcount: A:0.35, C:0.15, G:0.11, T:0.36


Consensus pattern (162 bp):   
AGTTGAATTATTTTACATTTTTGATTAAAACAGACTATAAGTGAATATCTACCTTGGAAAACATG
AAGAAAAAGATATTCATTAACAAAAAAAAGTCCATTTAAAGTCACCCATTCCTTCAAAAGTCTTA
TTACCCGCTTTAAACAATTTTAATTGATTTTA
Done.