Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018401861.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_4966.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 706

Length: 1178
ACGTcount: A:0.29, C:0.09, G:0.10, T:0.28

Warning! 282 characters in sequence are not A, C, G, or T


Found at i:1165 original size:171 final size:170

Alignment explanation


    Indices: 709--1166  Score: 443
    Period size: 170  Copynumber: 2.7  Consensus size: 170

        699 NNNNNNNTAC

                      *                    *         * *   *               * 
        709 ACATTCAATTCAGTTTGTTTTAACCAAAAATATACAAAGAAATGAAAGTTAAATCAATTTTGAGA
          1 ACATTCAATTTAGTTTGTTTTAACCAAAAATGTA-AAAGAATTCAAATTTAAATCAATTTTGACA

                     *         * *                            *              
        774 TTATAAAACTATTTAAAGTTAAAAACAAGGCTTTTGAAGGAATAGGTGACCATAAATAGACTTTT
         65 TTATAAAACCATTTAAAGTGAGAAACAAGGCTTTTGAAGGAATAGGTGACTATAAATAGACTTTT

                     *              *                
        839 CCTGCCAATGAATGCCTTTTTCTTTATATTTCTTGAGGTAG
        130 CCTGCCAATAAATGCCTTTTTCTTCATATTTCTTGAGGTAG

                *          * *       *            *          *         *  *  
        880 ACATCCAATTATAGTCTATTTTAA-TAAAAATGTAAAACAATTCAAATTAAAATCAATTATGGCA
          1 ACATTCAATT-TAGTTTGTTTTAACCAAAAATGTAAAAGAATTCAAATTTAAATCAATTTTGACA

                   *          *   *  **             *  *                     
        944 TTATAAATCCATTTAAAGCGAGTAATGAGGCTTTTGAAGGTATTGGTGACTATAAAT-GAACTTT
         65 TTATAAAACCATTTAAAGTGAGAAACAAGGCTTTTGAAGGAATAGGTGACTATAAATAG-ACTTT

              *             *           *    *********
       1008 TCTTGCCAATAAATGCTTTTTTCTTCATGTTTCNNNNNNNNN
        129 TCCTGCCAATAAATGCCTTTTTCTTCATATTTCTTGAGGTAG

            *           *                              *                   * 
       1050 NCATTCAATTTAATTTGTTTTAACCAAAAATGTATAAAGAATTTAAATTTAAATCAATTTTGATA
          1 ACATTCAATTTAGTTTGTTTTAACCAAAAATGTA-AAAGAATTCAAATTTAAATCAATTTTGACA

            *                   *              *       *        
       1115 ATATAAAACCATTTAAAGTGGGAAACAAGGCTTTTAAAGGAATGGGTGACTA
         65 TTATAAAACCATTTAAAGTGAGAAACAAGGCTTTTGAAGGAATAGGTGACTA

       1167 GAATTGGACT


Statistics
Matches: 222,  Mismatches: 61, Indels: 8
        0.76            0.21        0.03

Matches are distributed among these distances:
 169   11  0.05
 170  118  0.53
 171   83  0.37
 172   10  0.05

ACGTcount: A:0.38, C:0.11, G:0.13, T:0.35


Consensus pattern (170 bp):   
ACATTCAATTTAGTTTGTTTTAACCAAAAATGTAAAAGAATTCAAATTTAAATCAATTTTGACAT
TATAAAACCATTTAAAGTGAGAAACAAGGCTTTTGAAGGAATAGGTGACTATAAATAGACTTTTC
CTGCCAATAAATGCCTTTTTCTTCATATTTCTTGAGGTAG
Done.