Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_018397714.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_1013.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2382
ACGTcount: A:0.38, C:0.13, G:0.14, T:0.34
Warning! 40 characters in sequence are not A, C, G, or T
Found at i:414 original size:170 final size:169
Alignment explanation
Indices: 196--561 Score: 373
Period size: 170 Copynumber: 2.2 Consensus size: 169
186 ACTTTTCTAA
* * * * * * ** ***
196 TCAATGGATGACTTTTGCTTCACGTTTCTTAAGGTAAACATCCAATTATCAGCTGTTTTATTGAA
1 TCAATGGTTGGCTTTTGCTTCACGTTTCCTAACGCAAACATCCAATTATCACCTAATTTAACCAA
* * * * *
261 AACTG-AAAAAAATTCAACTTAAAAT-AATTCATAAGGTTATAAAATCGTTTAAAGTAAGTAA-T
66 AACTGTAAAAAAACTCAACTAAAAATCAATT-ATAAGATTATAAAACCATTT-AAGTAAG-AACT
*
323 AAAGCTT-TCAAAGCCATAAGTGACTATAAATGAACTTCTTATG
128 -AAGCTTGTCAAAGACATAAGTGACTATAAATGAACTT-TTATG
* * *
366 TCAATGGTTGGCTTTTGCTTCATGTTTCCCT-ACGCAAACATTCAATTATGACCTAATTTAACCA
1 TCAATGGTTGGCTTTTGCTTCACGTTT-CCTAACGCAAACATCCAATTATCACCTAATTTAACCA
* * *
430 AAATTGTAAAAATACTCAACTAAAAATCAATTATAAGATTATAAAACCATTTAAGTGAGAACTAA
65 AAACTGTAAAAAAACTCAACTAAAAATCAATTATAAGATTATAAAACCATTTAAGTAAGAACTAA
* * * * *
495 GGTTGTCGAAGACATGAGTGTCTATAAATGAACTTTTTTG
130 GCTTGTCAAAGACATAAGTGACTATAAATGAACTTTTATG
* *
535 TCAATGGTTGGCTCTCGCTTCACGTTT
1 TCAATGGTTGGCTTTTGCTTCACGTTT
562 TCGAGGTAAA
Statistics
Matches: 160, Mismatches: 31, Indels: 11
0.79 0.15 0.05
Matches are distributed among these distances:
169 35 0.22
170 85 0.53
171 36 0.22
172 4 0.03
ACGTcount: A:0.36, C:0.15, G:0.14, T:0.34
Consensus pattern (169 bp):
TCAATGGTTGGCTTTTGCTTCACGTTTCCTAACGCAAACATCCAATTATCACCTAATTTAACCAA
AACTGTAAAAAAACTCAACTAAAAATCAATTATAAGATTATAAAACCATTTAAGTAAGAACTAAG
CTTGTCAAAGACATAAGTGACTATAAATGAACTTTTATG
Found at i:1705 original size:341 final size:340
Alignment explanation
Indices: 1187--2382 Score: 877
Period size: 341 Copynumber: 3.5 Consensus size: 340
1177 NNNNNNNAAA
* *
1187 TCATTTAAAGTGAGTAATAAAGCTTTCAAAGGCATGAGTGACTCTAAATGGACTTTT-TGTGTCA
1 TCATTTAAAGCGAGTAATAAAGCTTTCAAAGGCATGAGTGACTATAAATGGACTTTTCT-TGTCA
** * * * * * * *
1251 GCGGATGTCTTTTACTTCATGTTTTCCAAAGTAAACATTCAATCATAATATGTTTTAACTAAAAC
65 ATGGATGGCTTTTACTTCATGTTTT-CTAAGGAAACATTCAATTATAATATATTTTAACCAAAAA
* * * *
1316 TGTAAAAAAACTCAACTAAAAATCAATTATAAGATTACAAAGCCATTTAAAG-AGAGTAATAAGG
129 TGTAAAAAAACTCAACTAAAAACCAACTATAAGATTACAAAACCATTTAAAGCA-AGTAATAAGA
* * *
1380 CTTTTC-AAGGCACGAATGACTATAAAT-GA-ATTTCTTGTCAACGGTTAGCTTCTGCTTCATG-
193 CTTTTCGAAGGCACGAATAACTATAAATAGACATTTCATGTCAACGGATAGCTTCTGCTTCATGT
* * * *
1441 TTCTCGAGGCCAATATTTC-ATTATAATCTATTTTAACCAAAAATATAAAAAAATTCAACTTAAA
258 TTCTCAAAGCAAACA-TTCAATTAT-ATCTATTTTAACCAAAAATAT-AAAAAATTCAACTT--A
* *
1505 AAATCAATTATGAGATTCTA-AAGC
318 AAATCAACTATGA-ATT-TATAAAC
* *
1529 -CATTTAAAGCGACTAATAAAGCTTTCAAAGGCATAAGTGACTATAAATGGACTTTTCTTGTCAA
1 TCATTTAAAGCGAGTAATAAAGCTTTCAAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAA
* * *
1593 TGGAGGGCTTTTTCTTCATGTTTTCTAAGGCAAACATTCAATTATAATTTATTTTAACCAAAAAT
66 TGGATGGCTTTTACTTCATGTTTTCTAAGG-AAACATTCAATTATAATATATTTTAACCAAAAAT
* * * * * * *
1658 GTAAAACAAATTCCA-TTAAAACCAGCTATGAA-TTTATAAAACCATTTAAAGCAAGTAATATGA
130 GTAAAA-AAACTCAACTAAAAACCAACTAT-AAGATTACAAAACCATTTAAAGCAAGTAATAAGA
* * * * ** * * *
1721 CTTTTCGAAGGTATGAGTAACTATAAATAGACTTTTCATGTCAATTGATGGCTTTTGCTTTATGT
193 CTTTTCGAAGGCACGAATAACTATAAATAGACATTTCATGTCAACGGATAGCTTCTGCTTCATGT
* * * *** *
1786 TTCTCAAAGTAAACATTCAATTATATTTGTTTTAGTTAAAAATGTAAAAAATTCAACTTAAAATC
258 TTCTCAAAGCAAACATTCAATTATATCTATTTTAACCAAAAATATAAAAAATTCAACTTAAAATC
1851 AACTATGAATTTATAAAC
323 AACTATGAATTTATAAAC
* * * * * * *
1869 TCATTTAAAGCTAGTAATATAGC-TTCTGAAGGCATGATTGACTATAAATAGACTTTTCTAGTAA
1 TCATTTAAAGCGAGTAATAAAGCTTTC-AAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCA
* * *
1933 ATGGATAGCTTTTGCTTCATG-TTTCTCAAGGAAGACATTCAATTATAATCTATTTTAACCAAAA
65 ATGGATGGCTTTTACTTCATGTTTTCT-AAGGAA-ACATTCAATTATAATATATTTTAACCAAAA
********** * * * * * * *
1997 ATGT-AAAAAANNNNNNNNNNAATCAATTATGAGATTATAAAACCATATAAAGCAAGTAACAAGG
128 ATGTAAAAAAACTCAACTAAAAACCAACTATAAGATTACAAAACCATTTAAAGCAAGTAATAAGA
* * * ** * * ** * * * **
2061 C-TTTCAAAGGTATGGGTGACTATAAATAGACTTTTCAACTGAATGGATGGCTTGAGCTTCATGT
193 CTTTTCGAAGGCACGAATAACTATAAATAGACATTTCATGTCAACGGATAGCTTCTGCTTCATGT
** * * * *********
2125 TTC-CTGAGACAAACATTCAATTATAATCTGTTTGAACCAAAAATGTAANNNNNNNNNNCTTAAA
258 TTCTCAAAG-CAAACATTCAATTAT-ATCTATTTTAACCAAAAATATAA-AAAATTCAACTTAAA
*
2189 ATC-AGTAATGAGA-TTATAAAAC
320 ATCAACT-ATGA-ATTTAT-AAAC
* * ** * * * *
2211 -CATTTAAAACGAGCAA-AAAGGCTTTTGAAGGTATGAGTGACTGTGAATAGACTTTTCTTGTCA
1 TCATTTAAAGCGAGTAATAAA-GCTTTCAAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCA
** * * * *
2274 ATGGATGGCTTTTTTTTCACGTTTTCTAAGGAAGACATTCAATTATAATCTGTTCTAACCAAAAA
65 ATGGATGGCTTTTACTTCATGTTTTCTAAGGAA-ACATTCAATTATAATATATTTTAACCAAAAA
* * * * *
2339 TGT-AAAAAACTTCAACTTAAAATCAATTATGAGATTATAAAACC
129 TGTAAAAAAAC-TCAACTAAAAACCAACTATAAGATTACAAAACC
Statistics
Matches: 689, Mismatches: 138, Indels: 54
0.78 0.16 0.06
Matches are distributed among these distances:
338 3 0.00
339 76 0.11
340 79 0.11
341 395 0.57
342 63 0.09
343 16 0.02
344 42 0.06
345 15 0.02
ACGTcount: A:0.38, C:0.14, G:0.13, T:0.33
Consensus pattern (340 bp):
TCATTTAAAGCGAGTAATAAAGCTTTCAAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAA
TGGATGGCTTTTACTTCATGTTTTCTAAGGAAACATTCAATTATAATATATTTTAACCAAAAATG
TAAAAAAACTCAACTAAAAACCAACTATAAGATTACAAAACCATTTAAAGCAAGTAATAAGACTT
TTCGAAGGCACGAATAACTATAAATAGACATTTCATGTCAACGGATAGCTTCTGCTTCATGTTTC
TCAAAGCAAACATTCAATTATATCTATTTTAACCAAAAATATAAAAAATTCAACTTAAAATCAAC
TATGAATTTATAAAC
Found at i:1887 original size:511 final size:508
Alignment explanation
Indices: 1215--2379 Score: 1155
Period size: 511 Copynumber: 2.3 Consensus size: 508
1205 AAAGCTTTCA
* * * * ** ** * *
1215 AAGGCATGAGTGACTCTAAATGGACTTTTTGTGTCAGCGGATGTCTTTTACTTCATGTTTTCCAA
1 AAGGTATGAGTAACTATAAATAGACTTTTCATGTCAATGGATGGCTTTT-CTTTATGTTTT-CAA
* * * *
1280 AGTAAACATTCAATCATAATATGTTTTAACTAAAACTGTAAAAAAACTCAACTAAAAATCAATTA
64 AGTAAACATTCAATTATAATATGTTTTAACTAAAAATGT-AAAAAATTCAACTTAAAATCAATTA
* * *
1345 TAAGATTACAAAGCCATTTAAAGAGAGTAATA-AGGCTTTTCAAGGCACGAATGACTATAAAT-G
128 TGA-ATTATAAAGCCATTTAAAGAGAGTAATATA-GCTTCTCAAGGCACGAATGACTATAAATAG
* * * * * *
1408 A-ATTTCTTGTCAACGGTTAGCTTCTGCTTCATG-TTCTCGAGGCCAATA-TTTC-ATTATAATC
191 ACATTTCTAGTAAACGGATAGCTTCTGCTTCATGTTTCTCAAGG--AAGACATTCAATTATAATC
* * *
1469 TATTTTAACCAAAAATATAAAAAAATTCAACTTAAAAAATCAATTATGAGATTCTAAAGCCATTT
254 TATTTTAACCAAAAATAT-AAAAAA--CAACTTAAAAAATCAATTATGAGATTATAAAACCATAT
* * * ***
1534 AAAGCGACTAATAAAGCTTTCAAAGGCATAAGTGACTATAAATGGACTTTTCTTGTCAATGGAGG
316 AAAGCAACTAACAAAGCTTTCAAAGGCATAAGTGACTATAAATAGACTTTTCAACTCAATGGAGG
*** * * * *
1599 GCTTTTTCTTCATGTTTTCTAAGGCAAACATTCAATTATAATTTATTTTAACCAAAAATGT-AAA
381 GCTTGAGCTTCATGTTTCCTAAGACAAACATTCAATTATAATCTATTTGAACCAAAAATGTAAAA
* * * *
1663 ACAAATTCCATTAAAACCAGCT-ATGA-ATTTATAAAACCATTTAAAGCAAGTAATATGACTTTT
446 ACAAATTCC-TTAAAACCAG-TAATGAGA-TTATAAAACCATTTAAAACAAGCAAAAAGACTTTT
1726 CG
508 -G
*
1728 AAGGTATGAGTAACTATAAATAGACTTTTCATGTCAATTGATGGCTTTTGCTTTATGTTTCTCAA
1 AAGGTATGAGTAACTATAAATAGACTTTTCATGTCAATGGATGGCTTTT-CTTTATGTTT-TCAA
* ** *
1793 AGTAAACATTCAATTAT-ATTTGTTTTAGTTAAAAATGTAAAAAATTCAACTTAAAATCAACTAT
64 AGTAAACATTCAATTATAATATGTTTTAACTAAAAATGTAAAAAATTCAACTTAAAATCAATTAT
** * * *
1857 GAATTTATAAA-CTCATTTAAAGCTAGTAATATAGCTTCTGAAGGCATGATTGACTATAAATAGA
129 GAA-TTATAAAGC-CATTTAAAGAGAGTAATATAGCTTCTCAAGGCACGAATGACTATAAATAGA
* * *
1921 CTTTTCTAGTAAATGGATAGCTTTTGCTTCATGTTTCTCAAGGAAGACATTCAATTATAATCTAT
192 CATTTCTAGTAAACGGATAGCTTCTGCTTCATGTTTCTCAAGGAAGACATTCAATTATAATCTAT
* **********
1986 TTTAACCAAAAATGTAAAAAANNNNNNNNNNAATCAATTATGAGATTATAAAACCATATAAAGCA
257 TTTAACCAAAAATATAAAAAACAACTTAAAAAATCAATTATGAGATTATAAAACCATATAAAGCA
* * * ** * *
2051 AGTAACAAGGCTTTCAAAGGTATGGGTGACTATAAATAGACTTTTCAACTGAATGGATGGCTTGA
322 ACTAACAAAGCTTTCAAAGGCATAAGTGACTATAAATAGACTTTTCAACTCAATGGAGGGCTTGA
* * ********
2116 GCTTCATGTTTCCTGAGACAAACATTCAATTATAATCTGTTTGAACCAAAAATGTAANNNNNNNN
387 GCTTCATGTTTCCTAAGACAAACATTCAATTATAATCTATTTGAACCAAAAATGTAAAAACAAAT
** * * *
2181 NNCTTAAAATCAGTAATGAGATTATAAAACCATTTAAAACGAGCAAAAAGGCTTTTG
452 TCCTTAAAACCAGTAATGAGATTATAAAACCATTTAAAACAAGCAAAAAGACTTTTG
* * * * * * *
2238 AAGGTATGAGTGACTGTGAATAGACTTTTCTTGTCAATGGATGGCTTTTTTTTCACGTTTTCTAA
1 AAGGTATGAGTAACTATAAATAGACTTTTCATGTCAATGGATGGCTTTTCTTT-ATGTTTTCAAA
* * * *
2303 GGAAGACATTCAATTATAATCTGTTCTAACCAAAAATGTAAAAAACTTCAACTTAAAATCAATTA
65 GTAA-ACATTCAATTATAATATGTTTTAACTAAAAATGTAAAAAA-TTCAACTTAAAATCAATTA
2368 TGAGATTATAAA
128 TGA-ATTATAAA
2380 ACC
Statistics
Matches: 530, Mismatches: 105, Indels: 35
0.79 0.16 0.05
Matches are distributed among these distances:
509 10 0.02
510 65 0.12
511 263 0.50
512 54 0.10
513 103 0.19
514 35 0.07
ACGTcount: A:0.38, C:0.14, G:0.13, T:0.33
Consensus pattern (508 bp):
AAGGTATGAGTAACTATAAATAGACTTTTCATGTCAATGGATGGCTTTTCTTTATGTTTTCAAAG
TAAACATTCAATTATAATATGTTTTAACTAAAAATGTAAAAAATTCAACTTAAAATCAATTATGA
ATTATAAAGCCATTTAAAGAGAGTAATATAGCTTCTCAAGGCACGAATGACTATAAATAGACATT
TCTAGTAAACGGATAGCTTCTGCTTCATGTTTCTCAAGGAAGACATTCAATTATAATCTATTTTA
ACCAAAAATATAAAAAACAACTTAAAAAATCAATTATGAGATTATAAAACCATATAAAGCAACTA
ACAAAGCTTTCAAAGGCATAAGTGACTATAAATAGACTTTTCAACTCAATGGAGGGCTTGAGCTT
CATGTTTCCTAAGACAAACATTCAATTATAATCTATTTGAACCAAAAATGTAAAAACAAATTCCT
TAAAACCAGTAATGAGATTATAAAACCATTTAAAACAAGCAAAAAGACTTTTG
Found at i:2095 original size:170 final size:170
Alignment explanation
Indices: 911--2382 Score: 1022
Period size: 170 Copynumber: 8.6 Consensus size: 170
901 TTTCGAAGGC
* * * * * * **
911 ATGGGTGGCTTTCGCATCATGTTTCTC-GAGGAAAAATTCAATTATAA-CTAGTTTTGAGAAAAA
1 ATGGATGGCTTTTGCTTCATGTTTCTCTAAGGAAACATTCAATTATAATCT-GTTTTAACCAAAA
* * * * * * *
974 ATATAAAAGAATTTAACTTAAAATCATTTATGAGACTATAAAACTATTTAAA-CAGTGTAATAAG
65 ATGTAAAA-AAATCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCA-AGTAATAAG
* * * * *
1038 CCTTTCGAAGGTATGAGTGGCTATCACTGGACTTTTCTAGTCA
128 GCTTTCGAAGGTATGAGTGACTATAAATAGACTTTTCTAGTCA
* * * * * * *
1081 ATGAATGGATTTCGCTTCACGTTTCT-TAAGGAAAACATCCAATTATTAGT-TGTTTGAA-CAAA
1 ATGGATGGCTTTTGCTTCATGTTTCTCTAAGG-AAACATTCAATTA-TAATCTGTTTTAACCAAA
* ********** * **
1143 AAT-TGATAAAAATTCAACTTAAAAT-AATTTANNNNNNNNNNAAATCATTTAAAGTGAGTAATA
64 AATGT-A-AAAAAATCAACTTAAAATCAA-TTATGAGATTATAAAACCATTTAAAGCAAGTAATA
* * * * * *
1206 AAGCTTTCAAAGGCATGAGTGACTCTAAATGGACTTTT-TGTGTCA
126 AGGCTTTCGAAGGTATGAGTGACTATAAATAGACTTTTCT-AGTCA
** * * * * * * *
1251 GCGGATGTCTTTTACTTCATGTTT-TCCAAAGTAAACATTCAATCATAATATGTTTTAACTAAAA
1 ATGGATGGCTTTTGCTTCATGTTTCT-CTAAGGAAACATTCAATTATAATCTGTTTTAACCAAAA
* * * * *
1315 CTGTAAAAAAACTCAACTAAAAATCAATTATAAGATTACAAAGCCATTTAAAG-AGAGTAATAAG
65 ATGTAAAAAAA-TCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCA-AGTAATAAG
* * * * *
1379 GCTTTTC-AAGGCACGAATGACTATAAAT-GA-ATTTCTTGTCA
128 GC-TTTCGAAGGTATGAGTGACTATAAATAGACTTTTCTAGTCA
* * * * * * * *
1420 ACGGTTAGCTTCTGCTTCATG-TTCTC-GAGGCCAATATTTC-ATTATAATCTATTTTAACCAAA
1 ATGGATGGCTTTTGCTTCATGTTTCTCTAAGG-AAACA-TTCAATTATAATCTGTTTTAACCAAA
* * * * *
1482 AATATAAAAAAATTCAACTTAAAAAATCAATTATGAGATTCTAAAGCCATTTAAAGCGACTAATA
64 AATGTAAAAAAA-TCAACTT--AAAATCAATTATGAGATTATAAAACCATTTAAAGCAAGTAATA
* * * * * *
1547 AAGCTTTCAAAGGCATAAGTGACTATAAATGGACTTTTCTTGTCA
126 AGGCTTTCGAAGGTATGAGTGACTATAAATAGACTTTTCTAGTCA
* * * *
1592 ATGGAGGGCTTTTTCTTCATGTTT-TCTAAGGCAAACATTCAATTATAATTTATTTTAACCAAAA
1 ATGGATGGCTTTTGCTTCATGTTTCTCTAAGG-AAACATTCAATTATAATCTGTTTTAACCAAAA
* * ** *
1656 ATGTAAAACAAATTCCA-TTAAAACCAGCTATGA-ATTTATAAAACCATTTAAAGCAAGTAATAT
65 ATGTAAAA-AAA-TCAACTTAAAATCAATTATGAGA-TTATAAAACCATTTAAAGCAAGTAATAA
* *
1719 GACTTTTCGAAGGTATGAGTAACTATAAATAGACTTTTC-ATGTCA
127 GGC-TTTCGAAGGTATGAGTGACTATAAATAGACTTTTCTA-GTCA
* * * * * ***
1764 ATTGATGGCTTTTGCTTTATGTTTCTCAAAGTAAACATTCAATTAT-ATTTGTTTTAGTTAAAAA
1 ATGGATGGCTTTTGCTTCATGTTTCTCTAAGGAAACATTCAATTATAATCTGTTTTAACCAAAAA
* * *
1828 TGTAAAAAATTCAACTTAAAATCAACTATGA-ATT-TATAAACTCATTTAAAGCTAGTAATATA-
66 TGTAAAAAAATCAACTTAAAATCAATTATGAGATTATA-AAAC-CATTTAAAGCAAGTAATA-AG
* * *
1890 GC-TTCTGAAGGCATGATTGACTATAAATAGACTTTTCTAGTAA
128 GCTTTC-GAAGGTATGAGTGACTATAAATAGACTTTTCTAGTCA
* *
1933 ATGGATAGCTTTTGCTTCATGTTTCTC-AAGGAAGACATTCAATTATAATCTATTTTAACCAAAA
1 ATGGATGGCTTTTGCTTCATGTTTCTCTAAGGAA-ACATTCAATTATAATCTGTTTTAACCAAAA
********** * *
1997 ATGTAAAAAANNNNNNNNNNAATCAATTATGAGATTATAAAACCATATAAAGCAAGTAACAAGGC
65 ATGTAAAAAAATCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCAAGTAATAAGGC
* * * * *
2062 TTTCAAAGGTATGGGTGACTATAAATAGACTTTTCAACTGA
130 TTTCGAAGGTATGAGTGACTATAAATAGACTTTTCTAGTCA
** * * *
2103 ATGGATGGCTTGAGCTTCATGTTTC-CTGAGACAAACATTCAATTATAATCTGTTTGAACCAAAA
1 ATGGATGGCTTTTGCTTCATGTTTCTCTAAG-GAAACATTCAATTATAATCTGTTTTAACCAAAA
********* * * * * * *
2167 ATGTAANNNNNNNNNNCTTAAAATCAGTAATGAGATTATAAAACCATTTAAAACGAGCAAAAAGG
65 ATGTAA-AAAAATCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCAAGTAATAAGG
* * * *
2232 CTTTTGAAGGTATGAGTGACTGTGAATAGACTTTTCTTGTCA
129 CTTTCGAAGGTATGAGTGACTATAAATAGACTTTTCTAGTCA
** * *
2274 ATGGATGGCTTTTTTTTCACGTTT-TCTAAGGAAGACATTCAATTATAATCTGTTCTAACCAAAA
1 ATGGATGGCTTTTGCTTCATGTTTCTCTAAGGAA-ACATTCAATTATAATCTGTTTTAACCAAAA
*
2338 ATGTAAAAAACTTCAACTTAAAATCAATTATGAGATTATAAAACC
65 ATGTAAAAAA-ATCAACTTAAAATCAATTATGAGATTATAAAACC
Statistics
Matches: 1015, Mismatches: 233, Indels: 107
0.75 0.17 0.08
Matches are distributed among these distances:
167 2 0.00
168 50 0.05
169 116 0.11
170 375 0.37
171 310 0.31
172 110 0.11
173 45 0.04
174 7 0.01
ACGTcount: A:0.38, C:0.13, G:0.14, T:0.33
Consensus pattern (170 bp):
ATGGATGGCTTTTGCTTCATGTTTCTCTAAGGAAACATTCAATTATAATCTGTTTTAACCAAAAA
TGTAAAAAAATCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCAAGTAATAAGGCT
TTCGAAGGTATGAGTGACTATAAATAGACTTTTCTAGTCA
Done.