Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_018401872.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_4976.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 6644
ACGTcount: A:0.36, C:0.11, G:0.12, T:0.32
Warning! 635 characters in sequence are not A, C, G, or T
Found at i:1744 original size:342 final size:341
Alignment explanation
Indices: 792--5846 Score: 3349
Period size: 342 Copynumber: 14.8 Consensus size: 341
782 NNNNNNNNNN
* * *
792 AAATCAATTATGAGATTATAAAACCATTTAAAACGAGTAATAAGACTTTTGAAGCAATG-GATGA
1 AAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATGAG-TGA
* * * * ** * ** * *
856 CTATAAATGGACATTTCTTCCCAATAAATAGCTTTGACTACACGTTTCTTGAGATAGATATTCAA
65 CTATAAATGGACTTTTCTTGCCAATGAATGGCTTTTTCTTCATATTTCTTGAGGTAGACATTCAA
* * ** ** * * * *
921 TTATAGTCTATTTTAATGAAAAACGTAAATAAATTCAACTTAAAATTAATTATTAGATTGTAAAA
130 TTATAATCTGTTTTAACCAAAAATATAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAA
** * * * *
986 TTATTTAAAGCGAGTAAT-AGGC-TTTGAAGGAATGGGTGACTATAAATAAACTTTTCTTACCAA
195 CCATTTAAAGTGAGTAATAAGGCTTTTGAAGGAATGAGTGACTATAAATAGACTTTTCTTTCCAA
* * * * * * * * *
1049 TGAATGCCTTTTTC-ATCACGTTTCTAGATGTAGACATTCAATTATAACCTTTTTTAACCAAAAA
260 TGAATGACTTTTTCTA-CATGTTTTTCGAGGTAAACATTCAATTATAATCTGTTTTAA-TAAAAA
*********
1113 TATAAAAAAANNNNNNNNNN
323 TATAAAAAAA-TTCAACTTA
* * * ** * * *
1133 AAATCAATTTTGAGATTATAAAAACGTTTAAATTGAGTAGTAAGTCTTTTGAAGAAATGAGTGAC
1 AAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATGAGTGAC
* * * ** * ** *
1198 TTAAAAATAGACTTTT-TTACCAATGAATACCTTTTTCTTCATGTTTCTCAAGGTAGACACTCAA
66 -TATAAATGGACTTTTCTTGCCAATGAATGGCTTTTTCTTCATATTTCTTGAGGTAGACATTCAA
* *************************
1262 TTATACTCTGTTTTAANNNNNNNNNNNNNNNNNNNNNNNNNNAAAATCAATTATGAGATTATAAA
130 TTATAATCTGTTTTAA-CCAAAAATATAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAA
* * * * *
1327 AACTTTTAAAGTGAGTAATAAGGCTTTTGAAAGAATGAGAGACTATAAAT-GAATTTT-TATTCA
194 ACCATTTAAAGTGAGTAATAAGGCTTTTGAAGGAATGAGTGACTATAAATAGACTTTTCT-TTC-
* * * *
1390 CAATGAATGGCTTTTTCTACATGTTTTTCGAGATAAACATTCAATTATAGTCTATTTTAATGAAA
257 CAATGAATGACTTTTTCTACATGTTTTTCGAGGTAAACATTCAATTATAATCTGTTTTAAT-AAA
*
1455 AATATAAATAAATTCAACTTA
321 AATATAAAAAAATTCAACTTA
* *
1476 AAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATCAGGCTTTCGAAGGAAT-AGGTGA
1 AAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATGA-GTGA
* * * * * * * * * *
1540 TTATAAATGGGCTTTTATTGTCAAAGAATGACTTTTTGTTCAAATTTCTTGAGATAGACAATCAA
65 CTATAAATGGACTTTTCTTGCCAATGAATGGCTTTTTCTTCATATTTCTTGAGGTAGACATTCAA
* * * * *
1605 TTATAATATGTTTTAACCAATAATATAAATAAATTCAACTTAAAATCAATTATTAGTTTATAAAA
130 TTATAATCTGTTTTAACCAAAAATATAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAA
* **** * * *
1670 CCATTTAGAG-GAAGTAATAAGGCTTTTGAAGGCGCAAGTGACTATAAATACACTTTTCATGCCA
195 CCATTTAAAGTG-AGTAATAAGGCTTTTGAAGGAATGAGTGACTATAAATAGACTTTTCTTTCCA
* * ** *** * * * * **
1734 ATGGATGGCTTTTGT-TTTATGTTCCCCAAGGCACACATTCAATTGTAGCCT-TTTTCAACTAAA
259 ATGAATGACTTTT-TCTACATGTTTTTCGAGGTAAACATTCAATTATAATCTGTTTT-AA-TAAA
* *
1797 AATGTAAAAAAATTAAACTTA
321 AATATAAAAAAATTCAACTTA
* * * *
1818 AAATCAATTATGAGATTATAAAGCCATTTAAAACGAGTAATAAGGATTTTGAAGGAATTG-GAGA
1 AAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGAA-TGAGTGA
* * * * *
1882 CTATAAATGGACTTTTCTT-CACAATGAATGACATTTT-TACACATTTCTCGAGGCTA-ACATTC
65 CTATAAATGGACTTTTCTTGC-CAATGAATGGCTTTTTCTTCATATTTCTTGAGG-TAGACATTC
* * * * * * * * *
1944 AGTCATAGTCTATTTTGACTAAATATTTAAAAAAA-TCACCTTAAAATCAATTATGAGATTATAA
128 AATTATAATCTGTTTTAACCAAAAATATAAAAAAATTCAACTTAAAATCAATTATGAGATTATAA
** ** * * * *
2008 AATTATTTAAAACGAGTAATAAGGCTTTTAAAGGAATGAATGACTATAAATGGACATTTT-TTAC
193 AACCATTTAAAGTGAGTAATAAGGCTTTTGAAGGAATGAGTGACTATAAATAGAC-TTTTCTTTC
* * * * * * *
2072 TAATGAATGACTTTTACTATATATTTCTT-GAGATAGACATTCAATTATAATCTGTTTTAAACAA
257 CAATGAATGACTTTTTCTACATGTTT-TTCGAGGTAAACATTCAATTATAATCTGTTTT-AATAA
*
2136 AAATATAAAACAAAATCAACTTA
320 AAATATAAAA-AAATTCAACTTA
* * * *
2159 AAATCAATTATGGGATTATAAAACCATTTAAAGCGTGTAATAAGGCTTTTGAAGGAATGAGAGAA
1 AAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATGAGTGAC
** * * * * *
2224 TATAAAAAGACTTTTTTTCCCAATGAATGGCTTTTTCTAT-ATGTTTCTTG-GTGCAGATATTCA
66 TATAAATGGACTTTTCTTGCCAATGAATGGCTTTTTCT-TCATATTTCTTGAG-GTAGACATTCA
** ** * * *
2287 ATTATTGTCTGTTTTAATGAAAAATATAAATAAATACAACTTAAAATTAATTATGAGATTATAAA
129 ATTATAATCTGTTTTAACCAAAAATATAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAA
* ** * * * * * *
2352 ATCATTT-GTGACGAGTAATAAGGCTTTAGAAGGAATGGGT-ACTATAAATGGACTTTTCTTGCA
194 ACCATTTAAAG-TGAGTAATAAGGCTTTTGAAGGAATGAGTGACTATAAATAGACTTTTCTTTCC
* * * * ** *
2415 AATCAAT-ACCTTTCTCTTCACAT-TTGTTAG-GGTTGACATTCAATTATAATTTGTTTTAACTA
258 AATGAATGA-CTTTTTC-T-ACATGTTTTTCGAGGTAAACATTCAATTATAATCTGTTTTAA-TA
* *
2477 AAAA-AGTAAAAGAAATTTAACCTA
319 AAAATA-TAAAA-AAATTCAACTTA
* * * * * *
2501 AAATCAATTTTGAGATTACAAAACCATTTAAGGTGTGTAATAAGGCTTTTGAAGGAATGCGTGAC
1 AAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATGAGTGAC
* * ** ** * * *
2566 TATAAATGGAGTTTTTTTTATCAATGAATATCTTTTTCTTCATGTTTCTTAAGGTAGACATTTAA
66 TATAAATGGA-CTTTTCTTGCCAATGAATGGCTTTTTCTTCATATTTCTTGAGGTAGACATTCAA
* * * *
2631 TTATAATATGTTTTTGA-CAAAAATGTAAAAAAAATTTAACTTAAAATCAATTATGAGATTATAA
130 TTATAATCTG-TTTTAACCAAAAATAT-AAAAAAATTCAACTTAAAATCAATTATGAGATTATAA
* * *** *
2695 AACCATTTAAAG-CA--AGTAA-GCTTTTGAAGGAATGAAAAACTATAAATGGACTTTT-TTTCT
193 AACCATTTAAAGTGAGTAATAAGGCTTTTGAAGGAATGAGTGACTATAAATAGACTTTTCTTTC-
* * * * * * *
2755 CAATGAATGGCTTTTTCTACATG-TTTTCCATGCTAGAGACTCAATTATAATATGTTTTAACTAA
257 CAATGAATGACTTTTTCTACATGTTTTTCGA-GGTAAACATTCAATTATAATCTGTTTTAA-TAA
*
2819 AAATGTAAAACAAATTCAACTTA
320 AAATATAAAA-AAATTCAACTTA
* * * * * *
2842 AAATCTATT-TCGAGATTATAAAATCATTTAAAGTGAGTAGTAAGGCTTTTGAAGGAATGGGTCA
1 AAATCAATTAT-GAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATGAGTGA
** * * * * ** * * *
2906 CTACGAATAGACTTTT-TTTCTAATAAATACCTTTTTCTTCACAATTCTTGAGGTAGACATTCAG
65 CTATAAATGGACTTTTCTTGCCAATGAATGGCTTTTTCTTCATATTTCTTGAGGTAGACATTCAA
* * * * *
2970 TTATAATCTGTTTGAACAAAAAATGTAAAACAAATT-ATCTTAAAA-CTAATCATGAGATTATAA
130 TTATAATCTGTTTTAACCAAAAATATAAAA-AAATTCAACTTAAAATC-AATTATGAGATTATAA
* * * * * *
3033 AACCATTTAAAGCGAGTAACAAGGCTTTTAAAAGAATGGGTGACTATAAAT-GAACTTTTCTTAC
193 AACCATTTAAAGTGAGTAATAAGGCTTTTGAAGGAATGAGTGACTATAAATAG-ACTTTTCTTTC
* * * *
3097 CAATGAATGCATTTTTTCT-CATGTTTTTCGAGATAAACATTTAATTATAATATGTTTTAACTAA
257 CAATGAATG-ACTTTTTCTACATGTTTTTCGAGGTAAACATTCAATTATAATCTGTTTTAA-TAA
*
3161 AAATATAAAAAAATTGAACTTA
320 AAATATAAAAAAATTCAACTTA
* * * * * * *
3183 GAATCAATTATGAGATTACAAAAACTTTTAAAGCGAGTAATAAGGCTTTTGATGGAATGAGAGAT
1 AAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATGAGTGAC
* * * **
3248 TATAAATGGATTTTTGC-T-CACAATGAATGGCTTTTTCTACACTTTTTC-CAAGGTAGACATTC
66 TATAAATGGACTTTT-CTTGC-CAATGAATGGCTTTTTCTTCA-TATTTCTTGAGGTAGACATTC
* * ** * *********
3310 AATTATAGTCTATTTTAATAAAAAATATAAATAAATTCAACTTAAAATNNNNNNNNNNNNNNNNN
128 AATTATAATCTGTTTTAACCAAAAATATAAAAAAATTCAACTTAAAAT--------CAATTATGA
************************* *** * *
3375 NNNNNNNNNNNNNNNNNNNNNNNNNAATAACATTTTTGAAGGAATGGGTGACTATAAATGGACTT
185 GATTATAAAACCATTTAAAGTGAGTAATAAGGCTTTTGAAGGAATGAGTGACTATAAATAGACTT
* * * * * * *
3440 TTCTTGCCAAAGAAT-ATCTTTTTCTTCACGTTTCTAGAGGTACACATTCAATTATAATCTGTTT
250 TTCTTTCCAATGAATGA-CTTTTTCTACATGTTTTTCGAGGTAAACATTCAATTATAATCTGTTT
* * *
3504 TAATAAAAAATGTAAATAAGTTCAACTTA
314 TAAT-AAAAATATAAAAAAATTCAACTTA
* * * * * * ** *
3533 AAATTAATTATTAGTTTATAAAACCATTTAAAG-GAAGCAATAAGGATTTCGAAGGCGTGAATGA
1 AAATCAATTATGAGATTATAAAACCATTTAAAGCG-AGTAATAAGGCTTTTGAAGGAATGAGTGA
* * * * * * * * *
3597 CTCTAAATGCACTTTTCGTGCCAATGGATGGCTTTTGCTTCATGTTACCCAT-A-GAAGACATTC
65 CTATAAATGGACTTTTCTTGCCAATGAATGGCTTTTTCTTCATATT--TCTTGAGGTAGACATTC
* ** * * **********
3660 AATTGTAGCCTTTTTTAACCAAAAATGTAAAAAAATTCAACTTAAAATCNNNNNNNNNNTTATAA
128 AATTATAATCTGTTTTAACCAAAAATATAAAAAAATTCAACTTAAAATCAATTATGAGATTATAA
** ** * * *
3725 AAATATTTAAAGCAAGTAATAAGGATTTTGAAGGAATTG-GAGACTATAAATGGACTTTTC-TTC
193 AACCATTTAAAGTGAGTAATAAGGCTTTTGAAGGAA-TGAGTGACTATAAATAGACTTTTCTTTC
* * * * * * * *
3788 TCAATGAATGACTTTTTCTATATGTTTCTCGAGCTAAACATTCAGTTATAGTCTATTTTACTTAA
257 -CAATGAATGACTTTTTCTACATGTTTTTCGAGGTAAACATTCAATTATAATCTGTTTTAATAAA
* * *
3853 AATGTGAAAAAATTCACCTTA
321 AATATAAAAAAATTCAACTTA
* * * * * *
3874 AAATCAATTATAAGATTATAAAACCATTTAAAACGAGTAATACGACTTTCGAAGGAATGGGTGAC
1 AAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATGAGTGAC
* * * * * * ** * * *
3939 TATAAATGCACATTTCTTACTAATGAATGGCTTTTACTACACGTTTCTCGAGATATACATTCAAT
66 TATAAATGGACTTTTCTTGCCAATGAATGGCTTTTTCTTCATATTTCTTGAGGTAGACATTCAAT
* ** *
4004 TATAGTCTGTTTTAATGAAAAATGTAAAAAAA-TCAACTT-AAATCAATTATGAGATTATAAAAC
131 TATAATCTGTTTTAACCAAAAATATAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAAC
* * * * * * ** *
4067 CATTTAAAGCGAGTAACAAGACTTTTAAAGGAACGAGAGACTATAAAGGGACTCTTT-TTCCCAA
196 CATTTAAAGTGAGTAATAAGGCTTTTGAAGGAATGAGTGACTATAAATAGACT-TTTCTTTCCAA
* * * * * *
4131 TGAATGATTTTTTCTATATGTTTATT-AAGGCAGACATTCAATTATAGTCTGTTTTAATAAAAAA
260 TGAATGACTTTTTCTACATGTTT-TTCGAGGTAAACATTCAATTATAATCTGTTTTAAT-AAAAA
* * *
4195 TATAAATAAATTTAACATA
323 TATAAAAAAATTCAACTTA
** * ** *
4214 AAATCAATTATGAGATTATAAAATTATTTATAA-CAAGTAATAAAACTTTTGAAGGAATGAGTTA
1 AAATCAATTATGAGATTATAAAACCATTTA-AAGCGAGTAATAAGGCTTTTGAAGGAATGAGTGA
* * * * * ** * *
4278 CTATAAATGGACTTTTCTTGCAAATGAATGCCTTTCTCTTCATGTTTATCAAGGTAAACATTCCA
65 CTATAAATGGACTTTTCTTGCCAATGAATGGCTTTTTCTTCATATTTCTTGAGGTAGACATTCAA
* * * * *
4343 TTATAATATGTTTTAACTAGAAATATAAAAGAAATTCAACTTAAAATCAATTTTGAGATTACAAA
130 TTATAATCTGTTTTAACCAAAAATATAAAA-AAATTCAACTTAAAATCAATTATGAGATTATAAA
* *
4408 ACCATTTAAAGTGAGTAATAAGGCTTTTGAAGGAATGGGTGACTATAAATAGAGTTTT-TTAAT-
194 ACCATTTAAAGTGAGTAATAAGGCTTTTGAAGGAATGAGTGACTATAAATAGACTTTTCTT--TC
* * * * * * * * *
4471 CAATGAATG-CATTTTTTTTCACGTTTTCCTAGATAAACATTCAATCATAATCTAATTTTACTAA
257 CAATGAATGAC-TTTTTCTACATGTTTTTCGAGGTAAACATTCAATTATAATCT-GTTTTAATAA
*
4535 AAATATAAAAATAATTCAATTTA
320 AAATATAAAAA-AATTCAACTTA
* * * * ***
4558 AAATTAATTATAAGATTACAAAACCATTGAAAGCGAGTAATAAGGCTTTTGAAGGAATGAAAAAC
1 AAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATGAGTGAC
* * * * * * * *
4623 TATAAATAGACTTTTTTTCCCCATGAATGGCTTTTTC-T-ATATGTTTTCTAAGGCAGACACTCA
66 TATAAATGGACTTTTCTTGCCAATGAATGGCTTTTTCTTCATAT-TTCT-TGAGGTAGACATTCA
* ** * * *
4686 ATTATAATATGTTTTAATTAAAAATGTAAAAAATATTCAACTTAAAATCAATTTTAAGATTATAA
129 ATTATAATCTGTTTTAACCAAAAATATAAAAAA-ATTCAACTTAAAATCAATTATGAGATTATAA
*** * * * * * *
4751 AATTGTTTAAAGTGAGTAGTTAGGCTTTTGAAGGAATGGGTGACTACAAATAAACTTTT-TTT-T
193 AACCATTTAAAGTGAGTAATAAGGCTTTTGAAGGAATGAGTGACTATAAATAGACTTTTCTTTCC
* ** * * * *
4814 AATGAAT-ATCTTTTTCTTCACATTTCTCGATGTAAACATTCAGTTATAATCTATTTTAATGAAA
258 AATGAATGA-CTTTTTCTACATGTTTTTCGAGGTAAACATTCAATTATAATCTGTTTTAAT-AAA
4878 AATATAAAAAAAATTCAACTTA
321 AATAT-AAAAAAATTCAACTTA
* * * ** * *
4900 AAATCAATTATGAGACTATAAAAACTTTTAAAGTAAGTAATAAGGCTTTTGAAGGGATGGGTGAC
1 AAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATGAGTGAC
* * * *
4965 TATAAATGGACATTTCTTGCCAATGAAAGGCTTTTTCTCCATCTTTCTTGAGGTA-ACCATTCAA
66 TATAAATGGACTTTTCTTGCCAATGAATGGCTTTTTCTTCATATTTCTTGAGGTAGA-CATTCAA
* * * * * *
5029 TTATAGTCTCTTTTAA-TAAAAAAATATAAAAAATTAAACATAAAATCAATTATGAGATTATAAA
130 TTATAATCTGTTTTAACCAAAAATATA-AAAAAATTCAACTTAAAATCAATTATGAGATTATAAA
** * * * ** * * *
5093 ATTATTTATAGCGAGTAATAAGGTTTTTGAAATAATGAGAGACTATAAATGGTCTTTT-TTTCTC
194 ACCATTTAAAGTGAGTAATAAGGCTTTTGAAGGAATGAGTGACTATAAATAGACTTTTCTTTC-C
* * * * * * * * * * *
5157 AATGAATGACTTTCTCCATACGTTTTCCAAGGTAAATATTTAAGTATAGTTTGTTTTAATGAAAA
258 AATGAATGACTTTTTCTACATGTTTTTCGAGGTAAACATTCAATTATAATCTGTTTTAAT-AAAA
*
5222 ATATAAATAAATTCAACTTA
322 ATATAAAAAAATTCAACTTA
* * * * *
5242 AAACCAATTATGAGATTATAAAACTATTAAAAGTGAGTAATAAGGCTTTTGAAGGAATGGGTGAC
1 AAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATGAGTGAC
* * * * * * * *** *
5307 TATAAATAGACTTTTCTTACTAATGAATGTCTTTCTCTCCACATTTCACCATGTAGACATTCAAT
66 TATAAATGGACTTTTCTTGCCAATGAATGGCTTTTTCTTCATATTTCTTGAGGTAGACATTCAAT
* * * * *
5372 TATAATTTGTTTTAATCAAAAATGCA-AAAAAAATTCAACTTATAATTAATTTTGAGATTATAAA
131 TATAATCTGTTTTAACCAAAAAT--ATAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAA
* * * *
5436 ACCATTAAAAGTGATTAATAAGGCTTTTGAAGGAAT-AGGTGACTATAAATGGACTTTTCTTTTC
194 ACCATTTAAAGTGAGTAATAAGGCTTTTGAAGGAATGA-GTGACTATAAATAGACTTTTCTTTCC
** * * ** * **
5500 AAAAAAT-ACATTTTTCTTCATATTTTTTAAGGTAGACATTCAATTATAATCTGTTTTTACCAAA
258 AATGAATGAC-TTTTTCTACATGTTTTTCGAGGTAAACATTCAATTATAATCTG-TTTTAATAAA
5564 AATATAAAAACAATTCAACTTA
321 AATATAAAAA-AATTCAACTTA
* ** * **********
5586 AAATCAATTATGAGATTATATAACCATTTAAAGTAAGTAATAATGCTTTNNNNNNNNNNAGTGAC
1 AAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATGAGTGAC
* * * **
5651 TATAAATGGACTTTTCTTGCCAATGAAT-GCTTTGTTTTTTACATTTCTCAAGGTAGACATTCAA
66 TATAAATGGACTTTTCTTGCCAATGAATGGCTTT-TTCTTCATATTTCTTGAGGTAGACATTCAA
* ** * * *
5715 TTATAATTTGTCATAACCAAAAATGTATGAAAAATTCAACTTAAAATCAATTTTGAGATTATAAA
130 TTATAATCTGTTTTAACCAAAAATATA-AAAAAATTCAACTTAAAATCAATTATGAGATTATAAA
* * *
5780 A-CAGTTTTAAAGTCAGTAATAAGGCTGTTGAAGGAATGGGT-ACCTATAAATAGACTTTT-TTT
194 ACCA--TTTAAAGTGAGTAATAAGGCTTTTGAAGGAATGAGTGA-CTATAAATAGACTTTTCTTT
5842 GCCAA
256 -CCAA
5847 GGANNNNNNN
Statistics
Matches: 3663, Mismatches: 906, Indels: 286
0.75 0.19 0.06
Matches are distributed among these distances:
337 1 0.00
338 44 0.01
339 174 0.05
340 298 0.08
341 732 0.20
342 1008 0.28
343 583 0.16
344 527 0.14
345 51 0.01
348 1 0.00
349 13 0.00
350 227 0.06
351 4 0.00
ACGTcount: A:0.39, C:0.11, G:0.13, T:0.35
Consensus pattern (341 bp):
AAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATGAGTGAC
TATAAATGGACTTTTCTTGCCAATGAATGGCTTTTTCTTCATATTTCTTGAGGTAGACATTCAAT
TATAATCTGTTTTAACCAAAAATATAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAAC
CATTTAAAGTGAGTAATAAGGCTTTTGAAGGAATGAGTGACTATAAATAGACTTTTCTTTCCAAT
GAATGACTTTTTCTACATGTTTTTCGAGGTAAACATTCAATTATAATCTGTTTTAATAAAAATAT
AAAAAAATTCAACTTA
Found at i:2201 original size:172 final size:170
Alignment explanation
Indices: 792--5840 Score: 3024
Period size: 171 Copynumber: 29.5 Consensus size: 170
782 NNNNNNNNNN
* * *
792 AAATCAATTATGAGATTATAAAACCATTTAAAACGAGTAATAAGACTTTTGAAGCAATG-GATGA
1 AAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATGAG-TGA
* * * * ** * * * *
856 CTATAAATGGACATTTCTTCCCAATAAAT-AGCTTTGACTACACGTTTCTTGAGATAGATATTCA
65 CTATAAATGGAC-TTTTTTACTAATGAATGA-CTTTTTCTATATGTTTCTTGAGGTAGACATTCA
* * ** ** *
920 ATTATAGTCTATTTTAATGAAAAACGTAAATAAATTCAACTTA
128 ATTATAATCTGTTTTAAACAAAAATATAAAAAAATTCAACTTA
* * * ** *
963 AAATTAATTATTAGATTGTAAAATTATTTAAAGCGAGTAAT-AGGC-TTTGAAGGAATGGGTGAC
1 AAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATGAGTGAC
** * * * * *
1026 TATAAATAAACTTTTCTTACCAATGAATGCCTTTTTC-ATCACGTTTCTAGATGTAGACATTCAA
66 TATAAATGGACTTTT-TTACTAATGAATGACTTTTTCTAT-ATGTTTCTTGAGGTAGACATTCAA
* * * *********
1090 TTATAACCTTTTTTAACCAAAAATATAAAAAAANNNNNNNNNN
129 TTATAATCTGTTTTAAACAAAAATATAAAAAAA-TTCAACTTA
* * * ** * * *
1133 AAATCAATTTTGAGATTATAAAAACGTTTAAATTGAGTAGTAAGTCTTTTGAAGAAATGAGTGAC
1 AAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATGAGTGAC
* * * ** *
1198 TTAAAAATAGACTTTTTTACCAATGAAT-ACCTTTTTCT-TCATGTTTCTCAAGGTAGACACTCA
66 -TATAAATGGACTTTTTTACTAATGAATGA-CTTTTTCTAT-ATGTTTCTTGAGGTAGACATTCA
* *************************
1261 ATTATACTCTGTTTTAANNNNNNNNNNNNNNNNNNNNNNNNNNA
128 ATTATAATCTGTTTTAA-ACAAAAATATAAAAAAATTCAACTTA
* * * * *
1305 AAATCAATTATGAGATTATAAAAACTTTTAAAGTGAGTAATAAGGCTTTTGAAAGAATGAGAGAC
1 AAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATGAGTGAC
* * * * * *
1370 TATAAATGAATTTTTATTCAC-AATGAATGGCTTTTTCTACATGTTT-TTCGAGATAAACATTCA
66 TATAAATGGACTTTT-TT-ACTAATGAATGACTTTTTCTATATGTTTCTT-GAGGTAGACATTCA
* * ** *
1433 ATTATAGTCTATTTTAATGAAAAATATAAATAAATTCAACTTA
128 ATTATAATCTGTTTTAAACAAAAATATAAAAAAATTCAACTTA
* *
1476 AAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATCAGGCTTTCGAAGGAAT-AGGTGA
1 AAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATGA-GTGA
* * * * * ** * *
1540 TTATAAATGGGCTTTTATT-GTCAAAGAATGACTTTTTGT-TCAAATTTCTTGAGATAGACAATC
65 CTATAAATGGACTTTT-TTACT-AATGAATGACTTTTTCTAT-ATGTTTCTTGAGGTAGACATTC
* * * *
1603 AATTATAATATGTTTTAACCAATAATATAAATAAATTCAACTTA
127 AATTATAATCTGTTTTAAACAAAAATATAAAAAAATTCAACTTA
* * * ****
1647 AAATCAATTATTAGTTTATAAAACCATTTAGAG-GAAGTAATAAGGCTTTTGAAGGCGCAAGTGA
1 AAATCAATTATGAGATTATAAAACCATTTAAAGCG-AGTAATAAGGCTTTTGAAGGAATGAGTGA
** * * * * * * * *** * *
1711 CTATAAATACACTTTTCATGCCAATGGATGGCTTTTGT-TTTATGTTCCCCAAGGCACACATTCA
65 CTATAAATGGACTTTT-TTACTAATGAATGACTTTT-TCTATATGTTTCTTGAGGTAGACATTCA
* ** * * *
1775 ATTGTAGCCT-TTTTCAACTAAAAATGTAAAAAAATTAAACTTA
128 ATTATAATCTGTTTTAAAC-AAAAATATAAAAAAATTCAACTTA
* * * *
1818 AAATCAATTATGAGATTATAAAGCCATTTAAAACGAGTAATAAGGATTTTGAAGGAATTG-GAGA
1 AAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGAA-TGAGTGA
* * ** *
1882 CTATAAATGGACTTTTCTTCAC-AATGAATGACATTTT-TACACATTTCTCGAGGCTA-ACATTC
65 CTATAAATGGACTTTT-TT-ACTAATGAATGACTTTTTCTATATGTTTCTTGAGG-TAGACATTC
* * * * * * * *
1944 AGTCATAGTCTATTTT-GACTAAATATTTAAAAAAA-TCACCTTA
127 AATTATAATCTGTTTTAAAC-AAAAATATAAAAAAATTCAACTTA
** * * *
1987 AAATCAATTATGAGATTATAAAATTATTTAAAACGAGTAATAAGGCTTTTAAAGGAATGAATGAC
1 AAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATGAGTGAC
* * *
2052 TATAAATGGACATTTTTTACTAATGAATGACTTTTACTATATATTTCTTGAGATAGACATTCAAT
66 TATAAATGGAC-TTTTTTACTAATGAATGACTTTTTCTATATGTTTCTTGAGGTAGACATTCAAT
*
2117 TATAATCTGTTTTAAACAAAAATATAAAACAAAATCAACTTA
130 TATAATCTGTTTTAAACAAAAATATAAAA-AAATTCAACTTA
* * * *
2159 AAATCAATTATGGGATTATAAAACCATTTAAAGCGTGTAATAAGGCTTTTGAAGGAATGAGAGAA
1 AAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATGAGTGAC
** * * * * *
2224 TATAAAAAGACTTTTTTTCCCAATGAATGGCTTTTTCTATATGTTTCTTG-GTGCAGATATTCAA
66 TATAAATGGAC-TTTTTTACTAATGAATGACTTTTTCTATATGTTTCTTGAG-GTAGACATTCAA
** ** * *
2288 TTATTGTCTGTTTTAATGAAAAATATAAATAAATACAACTTA
129 TTATAATCTGTTTTAAACAAAAATATAAAAAAATTCAACTTA
* * ** * *
2330 AAATTAATTATGAGATTATAAAATCATTT-GTGACGAGTAATAAGGCTTTAGAAGGAATGGGT-A
1 AAATCAATTATGAGATTATAAAACCATTTAAAG-CGAGTAATAAGGCTTTTGAAGGAATGAGTGA
* * * * ** * *
2393 CTATAAATGGACTTTTCTTGCAAATCAAT-ACCTTTCTCT-TCACATTTGTT-AGGGTTGACATT
65 CTATAAATGGACTTTT-TTACTAATGAATGA-CTTTTTCTAT-ATGTTTCTTGA-GGTAGACATT
* * *
2455 CAATTATAATTTGTTTT-AACTAAAAA-AGTAAAAGAAATTTAACCTA
126 CAATTATAATCTGTTTTAAAC-AAAAATA-TAAAA-AAATTCAACTTA
* * * * * *
2501 AAATCAATTTTGAGATTACAAAACCATTTAAGGTGTGTAATAAGGCTTTTGAAGGAATGCGTGAC
1 AAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATGAGTGAC
* *
2566 TATAAATGGAGTTTTTTTTA-TCAATGAAT-ATCTTTTTCT-TCATGTTTCTTAAGGTAGACATT
66 TATAAATGGA--CTTTTTTACT-AATGAATGA-CTTTTTCTAT-ATGTTTCTTGAGGTAGACATT
* * ** * *
2628 TAATTATAATATGTTTTTGACAAAAATGTAAAAAAAATTTAACTTA
126 CAATTATAATCTGTTTTAAACAAAAATAT-AAAAAAATTCAACTTA
* ***
2674 AAATCAATTATGAGATTATAAAACCATTTAAAGC-A--AGTAA-GCTTTTGAAGGAATGAAAAAC
1 AAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATGAGTGAC
* * * ** * * *
2735 TATAAATGGACTTTTTTTCTCAATGAATGGCTTTTTCTACATGTTT-TCCATGCTAGAGACTCAA
66 TATAAATGGACTTTTTTACT-AATGAATGACTTTTTCTATATGTTTCTTGA-GGTAGACATTCAA
* *
2799 TTATAATATGTTTT-AACTAAAAATGTAAAACAAATTCAACTTA
129 TTATAATCTGTTTTAAAC-AAAAATATAAAA-AAATTCAACTTA
* * * * * *
2842 AAATCTATT-TCGAGATTATAAAATCATTTAAAGTGAGTAGTAAGGCTTTTGAAGGAATGGGTCA
1 AAATCAATTAT-GAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATGAGTGA
** * * * ***
2906 CTACGAATAGACTTTTTTTCTAATAAAT-ACCTTTTTCT-TCACAATTCTTGAGGTAGACATTCA
65 CTATAAATGGACTTTTTTACTAATGAATGA-CTTTTTCTAT-ATGTTTCTTGAGGTAGACATTCA
* * * *
2969 GTTATAATCTG-TTTGAACAAAAAATGTAAAACAAATT-ATCTTA
128 ATTATAATCTGTTTTAAAC-AAAAATATAAAA-AAATTCAACTTA
* * * * *
3012 AAA-CTAATCATGAGATTATAAAACCATTTAAAGCGAGTAACAAGGCTTTTAAAAGAATGGGTGA
1 AAATC-AATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATGAGTGA
* * * * * * *
3076 CTATAAATGAACTTTTCTTACCAATGAATGCATTTTTTCT-CATGTTT-TTCGAGATAAACATTT
65 CTATAAATGGACTTTT-TTACTAATGAATG-ACTTTTTCTATATGTTTCTT-GAGGTAGACATTC
* *
3139 AATTATAATATGTTTT-AACTAAAAATATAAAAAAATTGAACTTA
127 AATTATAATCTGTTTTAAAC-AAAAATATAAAAAAATTCAACTTA
* * * * * * *
3183 GAATCAATTATGAGATTACAAAAACTTTTAAAGCGAGTAATAAGGCTTTTGATGGAATGAGAGAT
1 AAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATGAGTGAC
* * * **
3248 TATAAATGGA-TTTTTGCTCAC-AATGAATGGCTTTTTCTACACTTTTTC-CAAGGTAGACATTC
66 TATAAATGGACTTTTT--T-ACTAATGAATGACTTTTTCTATA-TGTTTCTTGAGGTAGACATTC
* * *
3310 AATTATAGTCTATTTTAATA-AAAAATATAAATAAATTCAACTTA
127 AATTATAATCTGTTTTAA-ACAAAAATATAAAAAAATTCAACTTA
********************************** ***
3354 AAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATAACATTTTTGAAGGAA
1 AAAT--------CAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGAA
* * * * * *
3419 TGGGTGACTATAAATGGACTTTTCTTGCCAAAGAAT-ATCTTTTTCT-TCACGTTTCTAGAGGTA
58 TGAGTGACTATAAATGGACTTTT-TTACTAATGAATGA-CTTTTTCTAT-ATGTTTCTTGAGGTA
* * * *
3482 CACATTCAATTATAATCTGTTTTAATA-AAAAATGTAAATAAGTTCAACTTA
120 GACATTCAATTATAATCTGTTTTAA-ACAAAAATATAAAAAAATTCAACTTA
* * * * * * ** *
3533 AAATTAATTATTAGTTTATAAAACCATTTAAAG-GAAGCAATAAGGATTTCGAAGGCGTGAATGA
1 AAATCAATTATGAGATTATAAAACCATTTAAAGCG-AGTAATAAGGCTTTTGAAGGAATGAGTGA
* * * * * * * * * * *
3597 CTCTAAATGCACTTTTCGTGCCAATGGATGGCTTTTGCT-TCATGTTACCCAT-A-GAAGACATT
65 CTATAAATGGACTTTT-TTACTAATGAATGACTTTTTCTAT-ATGTT--TCTTGAGGTAGACATT
* ** * * *
3659 CAATTGTAGCCTTTTTTAACCAAAAATGTAAAAAAATTCAACTTA
126 CAATTATAATCTGTTTTAAACAAAAATATAAAAAAATTCAACTTA
********** ** * * *
3704 AAATCNNNNNNNNNNTTATAAAAATATTTAAAGCAAGTAATAAGGATTTTGAAGGAATTG-GAGA
1 AAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGAA-TGAGTGA
* * *
3768 CTATAAATGGACTTTTCTT-CTCAATGAATGACTTTTTCTATATGTTTCTCGAGCTAAACATTCA
65 CTATAAATGGACTTTT-TTACT-AATGAATGACTTTTTCTATATGTTTCTTGAGGTAGACATTCA
* * * * * * *
3832 GTTATAGTCTATTTT--ACTTAAAATGTGAAAAAATTCACCTTA
128 ATTATAATCTGTTTTAAAC-AAAAATATAAAAAAATTCAACTTA
* * * * * *
3874 AAATCAATTATAAGATTATAAAACCATTTAAAACGAGTAATACGACTTTCGAAGGAATGGGTGAC
1 AAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATGAGTGAC
* * * * * * * * *
3939 TATAAATGCACATTTCTTACTAATGAATGGCTTTTACTACACGTTTCTCGAGATATACATTCAAT
66 TATAAATGGAC-TTTTTTACTAATGAATGACTTTTTCTATATGTTTCTTGAGGTAGACATTCAAT
* ** *
4004 TATAGTCTGTTTTAATGAAAAATGTAAAAAAA-TCAACTT-
130 TATAATCTGTTTTAAACAAAAATATAAAAAAATTCAACTTA
* * * * *
4043 AAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAACAAGACTTTTAAAGGAACGAGAGAC
1 AAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATGAGTGAC
* * * * * * *
4108 TATAAAGGGACTCTTTTTCCCAATGAATGATTTTTTCTATATGTTTATTAAGGCAGACATTCAAT
66 TATAAATGGACT-TTTTTACTAATGAATGACTTTTTCTATATGTTTCTTGAGGTAGACATTCAAT
* * * *
4173 TATAGTCTGTTTTAATA-AAAAATATAAATAAATTTAACATA
130 TATAATCTGTTTTAA-ACAAAAATATAAAAAAATTCAACTTA
** * ** *
4214 AAATCAATTATGAGATTATAAAATTATTTATAA-CAAGTAATAAAACTTTTGAAGGAATGAGTTA
1 AAATCAATTATGAGATTATAAAACCATTTA-AAGCGAGTAATAAGGCTTTTGAAGGAATGAGTGA
* * * * * ** * *
4278 CTATAAATGGACTTTTCTTGCAAATGAATGCCTTTCTCT-TCATGTTTATCAAGGTAAACATTCC
65 CTATAAATGGACTTTT-TTACTAATGAATGACTTTTTCTAT-ATGTTTCTTGAGGTAGACATTCA
* *
4342 ATTATAATATGTTTT-AACTAGAAATATAAAAGAAATTCAACTTA
128 ATTATAATCTGTTTTAAAC-AAAAATATAAAA-AAATTCAACTTA
* * * *
4386 AAATCAATTTTGAGATTACAAAACCATTTAAAGTGAGTAATAAGGCTTTTGAAGGAATGGGTGAC
1 AAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATGAGTGAC
* * * * * * * *
4451 TATAAATAGAGTTTTTTAATCAATGAATG-CATTTTT-TTTCACGTTTTCCT-AGATAAACATTC
66 TATAAATGGACTTTTTTACT-AATGAATGAC-TTTTTCTAT-ATG-TTTCTTGAGGTAGACATTC
* * *
4513 AATCATAATCTAATTTT--ACTAAAAATATAAAAATAATTCAATTTA
127 AATTATAATCT-GTTTTAAAC-AAAAATATAAAAA-AATTCAACTTA
* * * * ***
4558 AAATTAATTATAAGATTACAAAACCATTGAAAGCGAGTAATAAGGCTTTTGAAGGAATGAAAAAC
1 AAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATGAGTGAC
* * ** * * * *
4623 TATAAATAGACTTTTTTTCCCCATGAATGGCTTTTTCTATATGTTT-TCTAAGGCAGACACTCAA
66 TATAAATGGAC-TTTTTTACTAATGAATGACTTTTTCTATATGTTTCT-TGAGGTAGACATTCAA
* ** *
4687 TTATAATATGTTTTAATTAAAAATGTAAAAAATATTCAACTTA
129 TTATAATCTGTTTTAAACAAAAATATAAAAAA-ATTCAACTTA
* * *** * * * *
4730 AAATCAATTTTAAGATTATAAAATTGTTTAAAGTGAGTAGTTAGGCTTTTGAAGGAATGGGTGAC
1 AAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATGAGTGAC
* ** * ** * * * *
4795 TACAAATAAACTTTTTT-TTAATGAAT-ATCTTTTTCT-TCACATTTCTCGATGTAAACATTCAG
66 TATAAATGGACTTTTTTACTAATGAATGA-CTTTTTCTAT-ATGTTTCTTGAGGTAGACATTCAA
* **
4857 TTATAATCTATTTTAATGAAAAATATAAAAAAAATTCAACTTA
129 TTATAATCTGTTTTAAACAAAAATAT-AAAAAAATTCAACTTA
* * * ** * *
4900 AAATCAATTATGAGACTATAAAAACTTTTAAAGTAAGTAATAAGGCTTTTGAAGGGATGGGTGAC
1 AAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATGAGTGAC
* * * * * ** *
4965 TATAAATGGACATTTCTTGCCAATGAAAGGCTTTTTCTCCATCTTTCTTGAGGTA-ACCATTCAA
66 TATAAATGGAC-TTTTTTACTAATGAATGACTTTTTCTATATGTTTCTTGAGGTAGA-CATTCAA
* * * * *
5029 TTATAGTCTCTTTTAATAAAAAAATAT-AAAAAATTAAACATA
129 TTATAATCTGTTTTAA-ACAAAAATATAAAAAAATTCAACTTA
** * * ** *
5071 AAATCAATTATGAGATTATAAAATTATTTATAGCGAGTAATAAGGTTTTTGAAATAATGAGAGAC
1 AAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATGAGTGAC
* * * * * ** * * *
5136 TATAAATGGTCTTTTTTTCTCAATGAATGACTTTCTCCATACGTTT-TCCAAGGTAAATATTTAA
66 TATAAATGGACTTTTTTACT-AATGAATGACTTTTTCTATATGTTTCT-TGAGGTAGACATTCAA
* * * ** *
5200 GTATAGTTTGTTTTAATGAAAAATATAAATAAATTCAACTTA
129 TTATAATCTGTTTTAAACAAAAATATAAAAAAATTCAACTTA
* * * * *
5242 AAACCAATTATGAGATTATAAAACTATTAAAAGTGAGTAATAAGGCTTTTGAAGGAATGGGTGAC
1 AAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATGAGTGAC
* * * ** ** *** *
5307 TATAAATAGACTTTTCTTACTAATGAATGTCTTTCTCTCCACATTTCACCATGTAGACATTCAAT
66 TATAAATGGACTTTT-TTACTAATGAATGACTTTTTCTATATGTTTCTTGAGGTAGACATTCAAT
* *
5372 TATAATTTGTTTTAATCAAAAATGCA-AAAAAAATTCAACTTA
130 TATAATCTGTTTTAAACAAAAAT--ATAAAAAAATTCAACTTA
* * * * * *
5414 TAATTAATTTTGAGATTATAAAACCATTAAAAGTGATTAATAAGGCTTTTGAAGGAAT-AGGTGA
1 AAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATGA-GTGA
* ** *
5478 CTATAAATGGACTTTTCTT-TTCAAAAAAT-ACATTTTTCTTCATAT-TTT-TTAAGGTAGACAT
65 CTATAAATGGACTTTT-TTACT-AATGAATGAC-TTTTTC-T-ATATGTTTCTTGAGGTAGACAT
* *
5539 TCAATTATAATCTGTTTTTACCAAAAATATAAAAACAATTCAACTTA
125 TCAATTATAATCTGTTTTAAACAAAAATATAAAAA-AATTCAACTTA
* ** * **********
5586 AAATCAATTATGAGATTATATAACCATTTAAAGTAAGTAATAATGCTTTNNNNNNNNNNAGTGAC
1 AAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATGAGTGAC
* * * * ** **
5651 TATAAATGGACTTTTCTTGCCAATGAATG-CTTTGTTTTTTACATTTCTCAAGGTAGACATTCAA
66 TATAAATGGACTTTT-TTACTAATGAATGACTTT-TTCTATATGTTTCTTGAGGTAGACATTCAA
* ** * * *
5715 TTATAATTTGTCATAACCAAAAATGTATGAAAAATTCAACTTA
129 TTATAATCTGTTTTAAACAAAAATATA-AAAAAATTCAACTTA
* * *
5758 AAATCAATTTTGAGATTATAAAA-CAGTTTTAAAGTC-AGTAATAAGGCTGTTGAAGGAATGGGT
1 AAATCAATTATGAGATTATAAAACCA--TTTAAAG-CGAGTAATAAGGCTTTTGAAGGAATGAGT
*
5821 -ACCTATAAATAGACTTTTTT
63 GA-CTATAAATGGACTTTTTT
5841 TGCCAAGGAN
Statistics
Matches: 3762, Mismatches: 933, Indels: 365
0.74 0.18 0.07
Matches are distributed among these distances:
167 15 0.00
168 103 0.03
169 347 0.09
170 564 0.15
171 1376 0.37
172 1052 0.28
173 182 0.05
174 12 0.00
178 5 0.00
179 101 0.03
180 4 0.00
181 1 0.00
ACGTcount: A:0.39, C:0.11, G:0.13, T:0.35
Consensus pattern (170 bp):
AAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATGAGTGAC
TATAAATGGACTTTTTTACTAATGAATGACTTTTTCTATATGTTTCTTGAGGTAGACATTCAATT
ATAATCTGTTTTAAACAAAAATATAAAAAAATTCAACTTA
Found at i:2315 original size:683 final size:686
Alignment explanation
Indices: 1304--5634 Score: 2051
Period size: 683 Copynumber: 6.3 Consensus size: 686
1294 NNNNNNNNNN
*
1304 AAAATCAATTATGAGATTATAAAAACT-TTTAAAGTGAGTAATAAGGCTTTTGAAA-GAATGAGA
1 AAAATCAATTATGAGATTAT-AAAACTATTTAAAGCGAGTAATAAGGCTTTT-AAAGGAATGA-A
*
1367 GACTATAAAT-GA-ATTTTTATTCAC-AATGAATGGCTTTTTCTACATGTTTTTCGAGATAAACA
63 GACTATAAATGGACA-TTTT-TT-ACTAATGAATGGCTTTTTCTACATGTTTTT-GAGATAGACA
* * ** *
1429 TTCAATTATAGTCTATTTTAATGAAAAATAT-AAATAAATTCAACTTAAAATCAATTATGAGATT
124 TTCAATTATAATCTGTTTTAAACAAAAATATAAAACAAATTCAACTTAAAATCAATTATGAGATT
* * * * ** *
1493 ATAAAACCATTTAAAGCGAGTAATCAGGCTTTCGAAGGAAT-AGGTGATTATAAATGGGCTTTTA
189 ATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATGAGGAGAATATAAAAAGACTTTTA
** *
1557 TTGTCAAAGAATGACTTTTTGTTCAAATTTCTTGAGATAGACAATCAATTATAATATGTTTTAAC
254 TTCCCAAAGAATGACTTTTTCTTCAAATTTCTTGAGATAGACAATCAATTATAATATGTTTTAAC
* * * * *
1622 CAATAATATAAATAAATTCAACTTAAAATCAATTATTAGTTTATAAAACCATTT-AGAGGAAGTA
319 CAAAAATATAAATAAATACAACTTAAAATCAATTATGAGATTATAAAACCATTTGAGACG-AGTA
* * * ** ** *
1686 ATAAGGCTTTTGAAGGCGCAA-GTG-ACTATAAATACACTTTTCATGCCAATGGATGGCTTT-TG
383 ATAAGGCTTTAGAA-G-G-AATGGGTACTATAAATACACTTTTCATGCAAATCAATACCTTTCTC
** * * *
1748 TT-TTATGTTCCCCAAGGCACACATTCAATTGTAGCCTT-TTTCAACTAAAAATGTAAAA-AAAT
445 TTCACAT-TT-CCCAAGGCACACATTCAATTATA-ACTTGTTTCAACTAAAAAAGTAAAAGAAAT
* * *
1810 TAAACTTAAAATCAATTATGAGATTATAAAGCCATTTAAAACGAGTAATAAGGATTTTGAAGGAA
507 TAAACCTAAAATCAATTATGAGATTACAAAACCATTTAAAACGAGTAATAAGGATTTTGAAGGAA
*
1875 TTG-GAGACTATAAATGGACTTTTCTTCA-CAATGAATGA-CATTTT-TACACATTTCTCGAGGC
572 -TGCGAGACTATAAATGGACTTTTCTTCATCAATGAAT-ATCATTTTCTACACATTTCTCAAGG-
* * * * * *
1936 TA-ACATTCAGTCATAGTCT-ATTTTGACTAAATAT-TTAAAAAAA-TCACCTT
634 TAGACATTCAATCATAATATGATTTTGAC-AAAAATGTAAAAAAAATTCAACTT
* *
1986 AAAATCAATTATGAGATTATAAAATTATTTAAAACGAGTAATAAGGCTTTTAAAGGAATGAATGA
1 AAAATCAATTATGAGATTATAAAACTATTTAAAGCGAGTAATAAGGCTTTTAAAGGAATGAA-GA
* * * *
2051 CTATAAATGGACATTTTTTACTAATGAATGACTTTTACTATATATTTCTTGAGATAGACATTCAA
65 CTATAAATGGACATTTTTTACTAATGAATGGCTTTTTCTACATGTTT-TTGAGATAGACATTCAA
* *
2116 TTATAATCTGTTTTAAACAAAAATATAAAACAAAATCAACTTAAAATCAATTATGGGATTATAAA
129 TTATAATCTGTTTTAAACAAAAATATAAAACAAATTCAACTTAAAATCAATTATGAGATTATAAA
* *
2181 ACCATTTAAAGCGTGTAATAAGGCTTTTGAAGGAATGA-GAGAATATAAAAAGACTTTTTTTCCC
194 ACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATGAGGAGAATATAAAAAGACTTTTATTCCC
* * ** * * ** * **
2245 AATGAATGGCTTTTTCTAT-ATGTTTCTTG-G-TGCAGATATTCAATTATTGTCTGTTTTAATGA
259 AAAGAATGACTTTTTCT-TCAAATTTCTTGAGAT--AGACAATCAATTATAATATGTTTTAACCA
* * *
2307 AAAATATAAATAAATACAACTTAAAATTAATTATGAGATTATAAAATCATTTGTGACGAGTAATA
321 AAAATATAAATAAATACAACTTAAAATCAATTATGAGATTATAAAACCATTTGAGACGAGTAATA
** *
2372 AGGCTTTAGAAGGAATGGGTACTATAAATGGACTTTTCTTGCAAATCAATACCTTTCTCTTCACA
386 AGGCTTTAGAAGGAATGGGTACTATAAATACACTTTTCATGCAAATCAATACCTTTCTCTTCACA
*** * *** * * *
2437 TTTGTTAGGGTTGACATTCAATTATAATTTGTTTTAACTAAAAAAGTAAAAGAAATTTAACCTAA
451 TTTCCCAAGGCACACATTCAATTATAACTTGTTTCAACTAAAAAAGTAAAAGAAATTAAACCTAA
* *** * * *
2502 AATCAATTTTGAGATTACAAAACCATTTAAGGTGTGTAATAAGGCTTTTGAAGGAATGCGTGACT
516 AATCAATTATGAGATTACAAAACCATTTAAAACGAGTAATAAGGATTTTGAAGGAATGCGAGACT
* * * * * ** * *
2567 ATAAATGGAGTTTTTTTTATCAATGAATATCTTTTTCTTCATGTTTCTTAAGGTAGACATTTAAT
581 ATAAATGGACTTTTCTTCATCAATGAATATCATTTTCTACACATTTCTCAAGGTAGACATTCAAT
* * *
2632 TATAATATGTTTTTGACAAAAATGTAAAAAAAATTTAACTT
646 CATAATATGATTTTGACAAAAATGTAAAAAAAATTCAACTT
* * * *
2673 AAAATCAATTATGAGATTATAAAACCATTTAAAGC-A--AGTAA-GCTTTTGAAGGAATGAAAAA
1 AAAATCAATTATGAGATTATAAAACTATTTAAAGCGAGTAATAAGGCTTTTAAAGGAATG-AAGA
* ** * * *
2734 CTATAAATGGAC-TTTTTTTCTCAATGAATGGCTTTTTCTACATGTTTTCCATGCTAGAGACTCA
65 CTATAAATGGACATTTTTTACT-AATGAATGGCTTTTTCTACATGTTTTTGA-GATAGACATTCA
* * *
2798 ATTATAATATGTTTT-AACTAAAAATGTAAAACAAATTCAACTTAAAATCTATT-TCGAGATTAT
128 ATTATAATCTGTTTTAAAC-AAAAATATAAAACAAATTCAACTTAAAATCAATTAT-GAGATTAT
* * * ** * ** *
2861 AAAATCATTTAAAGTGAGTAGTAAGGCTTTTGAAGGAATG-GGTCACTACGAATAGACTTTT-TT
191 AAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATGAGGAGAATATAAAAAGACTTTTATT
* * * * * * *
2924 TCTAATA-AAT-ACCTTTTTCTTCACAA-TTCTTGAGGTAGACATTCAGTTATAATCTGTTTGAA
256 CCCAA-AGAATGA-CTTTTTCTTCA-AATTTCTTGAGATAGACAATCAATTATAATATGTTTTAA
* * * * * * *
2986 CAAAAAATGTAAAACAAAT-TATCTTAAAA-CTAATCATGAGATTATAAAACCATTT-AAAGCGA
318 CCAAAAATAT-AAATAAATACAACTTAAAATC-AATTATGAGATTATAAAACCATTTGAGA-CGA
* * * * * * * *
3048 GTAACAAGGCTTTTA-AAAGAATGGGTGACTATAAATGA-ACTTTTCTTACCAATGAATGCATTT
380 GTAATAAGGC-TTTAGAAGGAATGGGT-ACTATAAAT-ACACTTTTCATGCAAATCAATACCTTT
* ** * ** * * *
3111 -T-TTCTCATGTTTTTCGAGATAAACATTTAATTATAA-TATGTTTTAACTAAAAATA-TAAAA-
442 CTCTTCACA--TTTCCCAAGGCACACATTCAATTATAACT-TGTTTCAACTAAAAA-AGTAAAAG
* * * * * * * *
3171 AAATTGAACTTAGAATCAATTATGAGATTACAAAAACTTTTAAAGCGAGTAATAAGGCTTTTGAT
503 AAATTAAACCTAAAATCAATTATGAGATTACAAAACCATTTAAAACGAGTAATAAGGATTTTGAA
* * * ** * *
3236 GGAATGAGAGATTATAAATGGATTTTTGC-TCA-CAATGAATGGCTTTTTCTACAC-TTTTTCCA
568 GGAATGCGAGACTATAAATGGACTTTT-CTTCATCAATGAATATCATTTTCTACACATTTCT-CA
* * * * * * *
3298 AGGTAGACATTCAATTATAGTCT-ATTTTAATAAAAA-ATATAAATAAATTCAACTT
631 AGGTAGACATTCAATCATAATATGATTTTGACAAAAATGTA-AAAAAAATTCAACTT
********************************** *** *
3353 AAAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATAACATTTTTGAAGGA
1 AAAAT--------CAATTATGAGATTATAAAACTATTTAAAGCGAGTAATAAGGCTTTTAAAGGA
** * * * ** * * * *
3418 ATGGGTGACTATAAATGGAC-TTTTCTTGCCAAAGAATATCTTTTTCTTCACGTTTCTAGAGGTA
58 AT-GAAGACTATAAATGGACATTTT-TTACTAATGAATGGCTTTTTCTACATGTTT-TTGAGATA
* * * * * *
3482 CACATTCAATTATAATCTGTTTTAATA-AAAAATGT-AAATAAGTTCAACTTAAAATTAATTATT
120 GACATTCAATTATAATCTGTTTTAA-ACAAAAATATAAAACAAATTCAACTTAAAATCAATTATG
* * * * ** * * *
3545 AGTTTATAAAACCATTTAAAG-GAAGCAATAAGGATTTCGAAGGCGTGA--ATGACTCT-AAATG
184 AGATTATAAAACCATTTAAAGCG-AGTAATAAGGCTTTTGAAGGAATGAGGA-GAATATAAAAAG
** * * * * * ** * * * * **
3606 CACTTTTCGTGCCAATGGATGGCTTTTGCTTCATGTTACCCAT-AGA-AGACATTCAATTGTAGC
247 -ACTTTTATTCCCAAAGAATGACTTTTTCTTCAAATT--TCTTGAGATAGACAATCAATTATAAT
* * * * * ********** **
3669 CTTTTTTAACCAAAAATGTAAAAAAATTCAACTTAAAATCNNNNNNNNNNTTATAAAAATATTT-
309 ATGTTTTAACCAAAAATATAAATAAATACAACTTAAAATCAATTATGAGATTATAAAACCATTTG
* * * * ** * * *
3733 AAAGCAAGTAATAAGGATTTTGAAGGAATTGGAG-ACTATAAATGGACTTTTC-TTCTCAATGAA
374 AGA-CGAGTAATAAGGCTTTAGAAGGAA-TGG-GTACTATAAATACACTTTTCATGC-AAATCAA
* ** * * * * * *
3796 TGA-CTTTTTCTAT-ATGTTTCTCGA-GCTAAACATTCAGTTATAGTCTAT-TTT--ACTTAAAA
435 T-ACCTTTCTCT-TCACATTTCCCAAGGC-ACACATTCAATTATA-ACT-TGTTTCAACTAAAAA
* * * * * *
3855 TGTGAAA-AAATT-CACCTTAAAATCAATTATAAGATTATAAAACCATTTAAAACGAGTAAT-AC
495 AGTAAAAGAAATTAAACC-TAAAATCAATTATGAGATTACAAAACCATTTAAAACGAGTAATAAG
* * * * * **
3917 GACTTTCGAAGGAATGGGTGACTATAAATGCACATTTCTT-A-CTAATGAATGGC-TTTTACTAC
559 GA-TTTTGAAGGAATGCGAGACTATAAATGGACTTTTCTTCATC-AATGAATATCATTTT-CTAC
* * * * * * * * *
3979 ACGTTTCTCGAGATATACATTCAATTATAGTCTG-TTTTAATGAAAAATGT-AAAAAAA-TCAAC
621 ACATTTCTCAAGGTAGACATTCAATCATAATATGATTTTGA-CAAAAATGTAAAAAAAATTCAAC
4041 TT
685 TT
* * * *
4043 -AAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAACAAGACTTTTAAAGGAACGAGAGA
1 AAAATCAATTATGAGATTATAAAACTATTTAAAGCGAGTAATAAGGCTTTTAAAGGAATGA-AGA
* * * ** * * **
4107 CTATAAAGGGAC-TCTTTTTCCCAATGAATGATTTTTTCTATATGTTTATTAAGGCAGACATTCA
65 CTATAAATGGACAT-TTTTTACTAATGAATGGCTTTTTCTACATGTTT-TTGAGATAGACATTCA
* * * *
4171 ATTATAGTCTGTTTTAATA-AAAAATAT-AAATAAATTTAACATAAAATCAATTATGAGATTATA
128 ATTATAATCTGTTTTAA-ACAAAAATATAAAACAAATTCAACTTAAAATCAATTATGAGATTATA
** * ** ** * ** *
4234 AAATTATTTATAA-CAAGTAATAAAACTTTTGAAGGAATGA-GTTACTATAAATGGACTTTTCTT
192 AAACCATTTA-AAGCGAGTAATAAGGCTTTTGAAGGAATGAGGAGAATATAAAAAGACTTTTATT
* * * ** * ** * * * * *
4297 -GCAAATGAATGCCTTTCTCTTCATGTTTATCAAGGTAAACATTCCATTATAATATGTTTTAACT
256 CCCAAA-GAATGACTTTTTCTTCAAATTTCTTGAGATAGACAATCAATTATAATATGTTTTAACC
* * * * * * *
4361 AGAAATATAAAAGAAATTCAACTTAAAATCAATTTTGAGATTACAAAACCATTT-AAAGTGAGTA
320 AAAAATAT-AAATAAATACAACTTAAAATCAATTATGAGATTATAAAACCATTTGAGA-CGAGTA
* * * * * * * * *
4425 ATAAGGCTTTTGAAGGAATGGGTGACTATAAATAGAGTTTTTTAAT-C-AATGAATGCATTTTTT
383 ATAAGGCTTTAGAAGGAATGGGT-ACTATAAATACA--CTTTTCATGCAAATCAATACCTTTCTC
* * * ** * * ** *
4488 TTCACGTTTTCCTAGATAAACATTCAATCATAATCTAATTT-TACTAAAAATA-TAAAA-ATAAT
445 TTCACATTTCCCAAGGCACACATTCAATTATAA-CTTGTTTCAACTAAAAA-AGTAAAAGA-AAT
* ** * * * * *
4550 TCAATTTAAAATTAATTATAAGATTACAAAACCATTGAAAGCGAGTAATAAGGCTTTTGAAGGAA
507 TAAACCTAAAATCAATTATGAGATTACAAAACCATTTAAAACGAGTAATAAGGATTTTGAAGGAA
** * * * * * ** * * ** *
4615 TGAAAAACTATAAATAGACTTTTTTTC-CCCATGAATGGCTTTTTCTATATGTTT-TCTAAGGCA
572 TGCGAGACTATAAATGGACTTTTCTTCATCAATGAATATCATTTTCTACACATTTCTC-AAGGTA
* * * * *
4678 GACACTCAATTATAATATG-TTTTAATTAAAAATGTAAAAAATATTCAACTT
636 GACATTCAATCATAATATGATTTTGA-CAAAAATGTAAAAAAAATTCAACTT
* * * * * * * * **
4729 AAAATCAATTTTAAGATTATAAAATTGTTTAAAGTGAGTAGTTAGGCTTTTGAAGGAATGGGTGA
1 AAAATCAATTATGAGATTATAAAACTATTTAAAGCGAGTAATAAGGCTTTTAAAGGAAT-GAAGA
* ** * ** * * *
4794 CTACAAATAAAC-TTTTTT-TTAATGAATATCTTTTTCTTCACAT-TTCTCGATG-TAAACATTC
65 CTATAAATGGACATTTTTTACTAATGAATGGCTTTTTC-T-ACATGTTTTTGA-GATAGACATTC
* * ** * *
4855 AGTTATAATCTATTTTAATGAAAAATATAAAAAAAATTCAACTTAAAATCAATTATGAGACTATA
127 AATTATAATCTGTTTTAAACAAAAATATAAAACAAATTCAACTTAAAATCAATTATGAGATTATA
* * ** * * * ** * * *
4920 AAAACTTTTAAAGTAAGTAATAAGGCTTTTGAAGGGATG-GGTGACTATAAATGGACATTTCTTG
192 AAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATGAGGAGAATATAAAAAGACTTTTATTC
* * * * ** * * * * * **
4984 CCAATGAAAGGCTTTTTCTCCATCTTTCTTGAGGTA-ACCATTCAATTATAGTCTCTTTTAATAA
257 CCAAAGAATGACTTTTTCTTCAAATTTCTTGAGATAGA-CAATCAATTATAATATGTTTTAA-CC
* ** *
5048 AAAAATATAAA-AAATTA-AACATAAAATCAATTATGAGATTATAAAATTATTT-ATAGCGAGTA
320 AAAAATATAAATAAA-TACAACTTAAAATCAATTATGAGATTATAAAACCATTTGAGA-CGAGTA
* * ** *** * * * *
5110 ATAAGGTTTTTGAAATAATGAGAG-ACTATAAATGGTCTTTT-TTTCTCAATGAATGA-CTTTCT
383 ATAAGGCTTTAGAAGGAATG-G-GTACTATAAATACACTTTTCATGC-AAATCAAT-ACCTTTCT
* * * * * * * * ** * * *
5172 CCAT-ACGTTTTCCAAGGTAAATATTTAAGTATAGTTTGTTTTAA-TGAAAAA-TATAAATAAAT
444 -CTTCACATTTCCCAAGGCACACATTCAATTATAACTTGTTTCAACTAAAAAAGTA-AAAGAAAT
* * * * * * *
5234 TCAACTTAAAACCAATTATGAGATTATAAAACTA-TTAAAAGTGAGTAATAAGGCTTTTGAAGGA
507 TAAACCTAAAATCAATTATGAGATTACAAAACCATTTAAAA-CGAGTAATAAGGATTTTGAAGGA
* * * * * * * *
5298 ATGGGTGACTATAAATAGACTTTTCTT-A-CTAATGAATGTC-TTTCTCTCCACATTTCACCATG
571 ATGCGAGACTATAAATGGACTTTTCTTCATC-AATGAATATCATTT-TCTACACATTTCTCAAGG
* * * *
5360 TAGACATTCAATTATAATTTG-TTTTAATCAAAAATGCAAAAAAAATTCAACTT
634 TAGACATTCAATCATAATATGATTTTGA-CAAAAATGTAAAAAAAATTCAACTT
* * * * * * * * **
5413 ATAATTAATTTTGAGATTATAAAACCATTAAAAGTGATTAATAAGGCTTTTGAAGGAATAGGTGA
1 AAAATCAATTATGAGATTATAAAACTATTTAAAGCGAGTAATAAGGCTTTTAAAGGAAT-GAAGA
* * ** * * * * *
5478 CTATAAATGGACTTTTCTTTTC-AAAAAAT-ACATTTTTCTTCATATTTTTTAAGGTAGACATTC
65 CTATAAATGGACATTT-TTTACTAATGAATGGC-TTTTTCTACAT-GTTTTTGAGATAGACATTC
* *
5541 AATTATAATCTGTTTTTACCAAAAATATAAAA-ACAATTCAACTTAAAATCAATTATGAGATTAT
127 AATTATAATCTGTTTTAAACAAAAATATAAAACA-AATTCAACTTAAAATCAATTATGAGATTAT
* ** *
5605 ATAACCATTTAAAGTAAGTAATAATGCTTT
191 AAAACCATTTAAAGCGAGTAATAAGGCTTT
5635 NNNNNNNNNN
Statistics
Matches: 2803, Mismatches: 675, Indels: 338
0.73 0.18 0.09
Matches are distributed among these distances:
679 2 0.00
680 41 0.01
681 266 0.09
682 495 0.18
683 556 0.20
684 374 0.13
685 203 0.07
686 270 0.10
687 108 0.04
688 1 0.00
689 4 0.00
690 22 0.01
691 213 0.08
692 221 0.08
693 18 0.01
694 8 0.00
695 1 0.00
ACGTcount: A:0.39, C:0.11, G:0.13, T:0.36
Consensus pattern (686 bp):
AAAATCAATTATGAGATTATAAAACTATTTAAAGCGAGTAATAAGGCTTTTAAAGGAATGAAGAC
TATAAATGGACATTTTTTACTAATGAATGGCTTTTTCTACATGTTTTTGAGATAGACATTCAATT
ATAATCTGTTTTAAACAAAAATATAAAACAAATTCAACTTAAAATCAATTATGAGATTATAAAAC
CATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATGAGGAGAATATAAAAAGACTTTTATTCCCAA
AGAATGACTTTTTCTTCAAATTTCTTGAGATAGACAATCAATTATAATATGTTTTAACCAAAAAT
ATAAATAAATACAACTTAAAATCAATTATGAGATTATAAAACCATTTGAGACGAGTAATAAGGCT
TTAGAAGGAATGGGTACTATAAATACACTTTTCATGCAAATCAATACCTTTCTCTTCACATTTCC
CAAGGCACACATTCAATTATAACTTGTTTCAACTAAAAAAGTAAAAGAAATTAAACCTAAAATCA
ATTATGAGATTACAAAACCATTTAAAACGAGTAATAAGGATTTTGAAGGAATGCGAGACTATAAA
TGGACTTTTCTTCATCAATGAATATCATTTTCTACACATTTCTCAAGGTAGACATTCAATCATAA
TATGATTTTGACAAAAATGTAAAAAAAATTCAACTT
Done.