Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018401896.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_4998.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 789

Length: 1316
ACGTcount: A:0.17, C:0.07, G:0.06, T:0.14

Warning! 742 characters in sequence are not A, C, G, or T


Found at i:400 original size:21 final size:21

Alignment explanation


    Indices: 374--422  Score: 62
    Period size: 21  Copynumber: 2.3  Consensus size: 21

        364 GAGAAACGTG

                     *           
        374 AAGAAAAAAGCATTCATTGGC
          1 AAGAAAAAACCATTCATTGGC

                   **     *      
        395 AAGAAAAGTCCATTTATTGGC
          1 AAGAAAAAACCATTCATTGGC

                   
        416 AAGAAAA
          1 AAGAAAA

        423 GTCAATTTTT


Statistics
Matches: 24,  Mismatches: 4, Indels: 0
        0.86            0.14        0.00

Matches are distributed among these distances:
  21   24  1.00

ACGTcount: A:0.49, C:0.12, G:0.18, T:0.20


Consensus pattern (21 bp):   
AAGAAAAAACCATTCATTGGC

Found at i:423 original size:21 final size:21

Alignment explanation


    Indices: 384--430  Score: 76
    Period size: 21  Copynumber: 2.2  Consensus size: 21

        374 AAGAAAAAAG

                *                
        384 CATTCATTGGCAAGAAAAGTC
          1 CATTTATTGGCAAGAAAAGTC

                                 
        405 CATTTATTGGCAAGAAAAGTC
          1 CATTTATTGGCAAGAAAAGTC

            *    
        426 AATTT
          1 CATTT

        431 TTCGTTAAAT


Statistics
Matches: 24,  Mismatches: 2, Indels: 0
        0.92            0.08        0.00

Matches are distributed among these distances:
  21   24  1.00

ACGTcount: A:0.38, C:0.15, G:0.17, T:0.30


Consensus pattern (21 bp):   
CATTTATTGGCAAGAAAAGTC
Done.