Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018401899.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_500.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2224
ACGTcount: A:0.25, C:0.11, G:0.10, T:0.24

Warning! 666 characters in sequence are not A, C, G, or T


Found at i:1122 original size:170 final size:167

Alignment explanation


    Indices: 757--1195  Score: 493
    Period size: 170  Copynumber: 2.6  Consensus size: 167

        747 NNNACGTCAA

                       *                *                        *      *    
        757 GAAACATGAAGGAAAAGGCATTCATTGGCAAGAAAAGTCCATTAATACTCACCCATTCCTTCAAA
          1 GAAACATGAAGAAAAAGG--TTCATTGGTAAGAAAAGTCCATT--TACTCACCTATTCCTCCAAA

                       *           *        *  *                 *           
        822 AGCCTTATTACACACTTTAAATGATTTTATAAACTCAAAATTGATTTAAATTTGAATCTTTGCAC
         62 AGCCTTATTACTCACTTTAAATGGTTTTATAATCTAAAAATTGATTTAAATTTCAATCTTTGCAC

              *    *                             ****
        887 ATTTTTGGTTAAAACAGATTATAATTGAATGTCAACCNNNN
        127 ATCTTTGCTTAAAACAGATTATAATTGAATGTCAACCTCTG

            ******                               *                           
        928 NNNNNNTGAAGAAAAAGGTTCATTGGTAAGAAAAGTCTATTTACGGTCACCTATTCCTCCAAAAG
          1 GAAACATGAAGAAAAAGGTTCATTGGTAAGAAAAGTCCATTTAC--TCACCTATTCCTCCAAAAG

                           *                        *             *      *   
        993 CCTTATTACTCACTTAAAATGGTTTTATAATCTAAAAATTTATTTAAATTTCAGTTCTTTGTACA
         64 CCTTATTACTCACTTTAAATGGTTTTATAATCTAAAAATTGATTTAAATTTCA-ATCTTTGCACA

                                                     
       1058 TCTTT-CTATAAAACAGATTATAATTGAATGTCAACCTCTG
        128 TCTTTGCT-TAAAACAGATTATAATTGAATGTCAACCTCTG

                   *                       *  *          *         *         
       1098 GAAACATAAAGAAAAAGGTTCATTGGTAAGAGAATTCCATTTATAATCACCTATTTCTCCAAAAG
          1 GAAACATGAAGAAAAAGGTTCATTGGTAAGAAAAGTCCA-TT-TACTCACCTATTCCTCCAAAAG

                      *                      
       1163 CCTTATTACTTACTTTAAATGGTTTTATAATCT
         64 CCTTATTACTCACTTTAAATGGTTTTATAATCT

       1196 CNNNNNNNNN


Statistics
Matches: 222,  Mismatches: 40, Indels: 13
        0.81            0.15        0.05

Matches are distributed among these distances:
 167    3  0.01
 169   85  0.38
 170  119  0.54
 171   13  0.06
 172    2  0.01

ACGTcount: A:0.36, C:0.16, G:0.11, T:0.34


Consensus pattern (167 bp):   
GAAACATGAAGAAAAAGGTTCATTGGTAAGAAAAGTCCATTTACTCACCTATTCCTCCAAAAGCC
TTATTACTCACTTTAAATGGTTTTATAATCTAAAAATTGATTTAAATTTCAATCTTTGCACATCT
TTGCTTAAAACAGATTATAATTGAATGTCAACCTCTG
Done.