Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018401901.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_5001.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1751
ACGTcount: A:0.15, C:0.05, G:0.05, T:0.15

Warning! 1054 characters in sequence are not A, C, G, or T


Found at i:338 original size:172 final size:162

Alignment explanation


    Indices: 120--431  Score: 333
    Period size: 172  Copynumber: 1.9  Consensus size: 162

        110 NNNNNCTCGC

                                                                       *     
        120 TTTAAATGATTTTATAATCCCATAATTTATGTTAATTTAAA-TTTTTTTATATTTTTTTGTTAAA
          1 TTTAAATGATTTTATAATCCCATAATTTATGTTAATTTAAATTTTTTTTATA-TTTTTTATTAAA

                                                           *        *        
        184 ACAGATTACAATTGAATGTCTGCCTCCAGAAACATGAAGAAAAAGATGTCCATTAGTAAGAAAAG
         65 ACAGATTACAATTGAATGTCTGCCTCCAGAAACATGAAGAAAAAGATATCCATTAGCAAGAAAAG

                                                        
        249 -TCTATTTATAGTCACCGATGCCNNNNNNNNNNTTATTACTCAA
        130 TTC-ATTTATAGTCACCGATGCC----------TTATTACTCAA

                                         * *       **                        
        292 TTTAAATGATTTTATAA-CCTCATAATTTGTTTTAATTTGGATTTTTTTTATATTTTTTATTAAA
          1 TTTAAATGATTTTATAATCC-CATAATTTATGTTAATTTAAATTTTTTTTATATTTTTTATTAAA

             *      *          * *   **     **                *   *          
        356 ATAGATTATAATTGAATGTTTTCCTTGAGAAATGTGAAGAAAAAGATATCTATTGGCAAGAAAAG
         65 ACAGATTACAATTGAATGTCTGCCTCCAGAAACATGAAGAAAAAGATATCCATTAGCAAGAAAAG

                       
        421 TTCATTTATAG
        130 TTCATTTATAG

        432 NNNNNNNNNN


Statistics
Matches: 120,  Mismatches: 17, Indels: 6
        0.84            0.12        0.04

Matches are distributed among these distances:
 171    2  0.02
 172  106  0.88
 173   12  0.10

ACGTcount: A:0.35, C:0.09, G:0.12, T:0.41


Consensus pattern (162 bp):   
TTTAAATGATTTTATAATCCCATAATTTATGTTAATTTAAATTTTTTTTATATTTTTTATTAAAA
CAGATTACAATTGAATGTCTGCCTCCAGAAACATGAAGAAAAAGATATCCATTAGCAAGAAAAGT
TCATTTATAGTCACCGATGCCTTATTACTCAA
Done.