Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018401904.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_5005.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3121
ACGTcount: A:0.33, C:0.14, G:0.17, T:0.35


Found at i:3028 original size:25 final size:25

Alignment explanation


    Indices: 3000--3051  Score: 95
    Period size: 25  Copynumber: 2.1  Consensus size: 25

       2990 TGGTTGGGGC

                             *       
       3000 TAATGGAGGAGATTTGATTTGAGAT
          1 TAATGGAGGAGATTTGACTTGAGAT

                                     
       3025 TAATGGAGGAGATTTGACTTGAGAT
          1 TAATGGAGGAGATTTGACTTGAGAT

              
       3050 TA
          1 TA

       3052 TCTTATAATT


Statistics
Matches: 26,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  25   26  1.00

ACGTcount: A:0.33, C:0.02, G:0.31, T:0.35


Consensus pattern (25 bp):   
TAATGGAGGAGATTTGACTTGAGAT
Done.